Hb_000920_290

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig920: 179846-184393
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06650g
description POPTRDRAFT_178418; hypothetical protein
nr
ID XP_012091750.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067JM58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21556 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62429: 180369-180658 , PASA_asmbl_62430: 180743-180933 , PASA_asmbl_62431: 181189-181620 , PASA_asmbl_62432: 181650-181822 , PASA_asmbl_62434: 183723-184221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_290 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_000473_120 0.116218879 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
3 Hb_004116_180 0.1255287324 - - PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
4 Hb_002909_100 0.132341264 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
5 Hb_000470_110 0.1407930112 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
6 Hb_143766_030 0.14325257 - - protein with unknown function [Ricinus communis]
7 Hb_000200_170 0.1445518241 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
8 Hb_000492_080 0.1454449967 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
9 Hb_013405_180 0.1454496632 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
10 Hb_172421_010 0.1456242496 - - cysteine protease [Hevea brasiliensis]
11 Hb_003090_160 0.1460516137 - - -
12 Hb_002248_120 0.148276696 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
13 Hb_000321_120 0.1488376492 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
14 Hb_007897_030 0.1488495493 - - PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Jatropha curcas]
15 Hb_001951_100 0.1498193336 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
16 Hb_011828_010 0.1499490296 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
17 Hb_001446_060 0.1501216944 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
18 Hb_011930_100 0.1501445849 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
19 Hb_001269_050 0.1505252898 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
20 Hb_005000_090 0.1505955021 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_290 Hb_000920_290 Hb_000473_120 Hb_000473_120 Hb_000920_290--Hb_000473_120 Hb_004116_180 Hb_004116_180 Hb_000920_290--Hb_004116_180 Hb_002909_100 Hb_002909_100 Hb_000920_290--Hb_002909_100 Hb_000470_110 Hb_000470_110 Hb_000920_290--Hb_000470_110 Hb_143766_030 Hb_143766_030 Hb_000920_290--Hb_143766_030 Hb_000200_170 Hb_000200_170 Hb_000920_290--Hb_000200_170 Hb_031089_050 Hb_031089_050 Hb_000473_120--Hb_031089_050 Hb_011828_010 Hb_011828_010 Hb_000473_120--Hb_011828_010 Hb_001998_220 Hb_001998_220 Hb_000473_120--Hb_001998_220 Hb_020805_120 Hb_020805_120 Hb_000473_120--Hb_020805_120 Hb_003006_080 Hb_003006_080 Hb_000473_120--Hb_003006_080 Hb_002311_130 Hb_002311_130 Hb_000473_120--Hb_002311_130 Hb_000579_030 Hb_000579_030 Hb_004116_180--Hb_000579_030 Hb_001673_060 Hb_001673_060 Hb_004116_180--Hb_001673_060 Hb_033152_100 Hb_033152_100 Hb_004116_180--Hb_033152_100 Hb_001226_110 Hb_001226_110 Hb_004116_180--Hb_001226_110 Hb_000340_080 Hb_000340_080 Hb_004116_180--Hb_000340_080 Hb_000230_470 Hb_000230_470 Hb_002909_100--Hb_000230_470 Hb_000196_010 Hb_000196_010 Hb_002909_100--Hb_000196_010 Hb_003912_080 Hb_003912_080 Hb_002909_100--Hb_003912_080 Hb_009745_010 Hb_009745_010 Hb_002909_100--Hb_009745_010 Hb_005408_100 Hb_005408_100 Hb_002909_100--Hb_005408_100 Hb_000753_120 Hb_000753_120 Hb_002909_100--Hb_000753_120 Hb_002809_160 Hb_002809_160 Hb_000470_110--Hb_002809_160 Hb_004718_060 Hb_004718_060 Hb_000470_110--Hb_004718_060 Hb_001878_060 Hb_001878_060 Hb_000470_110--Hb_001878_060 Hb_011457_140 Hb_011457_140 Hb_000470_110--Hb_011457_140 Hb_000631_090 Hb_000631_090 Hb_000470_110--Hb_000631_090 Hb_054865_020 Hb_054865_020 Hb_000470_110--Hb_054865_020 Hb_002248_120 Hb_002248_120 Hb_143766_030--Hb_002248_120 Hb_003605_220 Hb_003605_220 Hb_143766_030--Hb_003605_220 Hb_143766_030--Hb_000200_170 Hb_000735_140 Hb_000735_140 Hb_143766_030--Hb_000735_140 Hb_023344_110 Hb_023344_110 Hb_143766_030--Hb_023344_110 Hb_000069_780 Hb_000069_780 Hb_143766_030--Hb_000069_780 Hb_002849_070 Hb_002849_070 Hb_000200_170--Hb_002849_070 Hb_000056_080 Hb_000056_080 Hb_000200_170--Hb_000056_080 Hb_004724_330 Hb_004724_330 Hb_000200_170--Hb_004724_330 Hb_000203_270 Hb_000203_270 Hb_000200_170--Hb_000203_270 Hb_001818_060 Hb_001818_060 Hb_000200_170--Hb_001818_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.425381 2.97774 1.38142 2.77169 0.373604 1.32628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.250553 0.157743 0.530649 1.00559 2.09786

CAGE analysis