Hb_000920_300

Information

Type -
Description -
Location Contig920: 186764-195969
Sequence    

Annotation

kegg
ID rcu:RCOM_1452660
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_012068650.1
description PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
swissprot
ID Q6NLV4
description Flowering time control protein FY OS=Arabidopsis thaliana GN=FY PE=1 SV=1
trembl
ID A0A067KZU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24522 PE=4 SV=1
Gene Ontology
ID GO:0004402
description flowering time control protein fy

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62438: 186974-187499 , PASA_asmbl_62439: 190777-190907 , PASA_asmbl_62440: 192673-195881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_300 0.0 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
2 Hb_003913_070 0.0647009215 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
3 Hb_002456_010 0.0653079253 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
4 Hb_002641_030 0.0686967716 - - PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
5 Hb_006520_040 0.069715618 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
6 Hb_004934_050 0.076766211 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
7 Hb_001671_100 0.0781145855 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
8 Hb_119530_010 0.0782997203 - - -
9 Hb_007416_120 0.0783649956 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
10 Hb_002477_090 0.0793785032 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
11 Hb_001301_150 0.0821999904 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
12 Hb_001876_050 0.082689369 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
13 Hb_001999_310 0.0828106688 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
14 Hb_004781_010 0.083067846 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
15 Hb_009079_030 0.0830882138 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
16 Hb_000111_290 0.0832692258 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
17 Hb_001266_100 0.0843999528 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
18 Hb_000008_420 0.0844989311 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
19 Hb_001614_060 0.0848212951 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
20 Hb_003529_170 0.0850175951 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_300 Hb_000920_300 Hb_003913_070 Hb_003913_070 Hb_000920_300--Hb_003913_070 Hb_002456_010 Hb_002456_010 Hb_000920_300--Hb_002456_010 Hb_002641_030 Hb_002641_030 Hb_000920_300--Hb_002641_030 Hb_006520_040 Hb_006520_040 Hb_000920_300--Hb_006520_040 Hb_004934_050 Hb_004934_050 Hb_000920_300--Hb_004934_050 Hb_001671_100 Hb_001671_100 Hb_000920_300--Hb_001671_100 Hb_003734_010 Hb_003734_010 Hb_003913_070--Hb_003734_010 Hb_000111_290 Hb_000111_290 Hb_003913_070--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_003913_070--Hb_001417_030 Hb_001999_310 Hb_001999_310 Hb_003913_070--Hb_001999_310 Hb_001814_030 Hb_001814_030 Hb_003913_070--Hb_001814_030 Hb_003411_040 Hb_003411_040 Hb_003913_070--Hb_003411_040 Hb_002456_010--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_002456_010--Hb_001876_050 Hb_000614_240 Hb_000614_240 Hb_002456_010--Hb_000614_240 Hb_004324_130 Hb_004324_130 Hb_002456_010--Hb_004324_130 Hb_003544_060 Hb_003544_060 Hb_002456_010--Hb_003544_060 Hb_002374_010 Hb_002374_010 Hb_002641_030--Hb_002374_010 Hb_011537_050 Hb_011537_050 Hb_002641_030--Hb_011537_050 Hb_003529_170 Hb_003529_170 Hb_002641_030--Hb_003529_170 Hb_001723_020 Hb_001723_020 Hb_002641_030--Hb_001723_020 Hb_033642_090 Hb_033642_090 Hb_002641_030--Hb_033642_090 Hb_001225_040 Hb_001225_040 Hb_006520_040--Hb_001225_040 Hb_000981_030 Hb_000981_030 Hb_006520_040--Hb_000981_030 Hb_002026_210 Hb_002026_210 Hb_006520_040--Hb_002026_210 Hb_003517_040 Hb_003517_040 Hb_006520_040--Hb_003517_040 Hb_006520_040--Hb_003913_070 Hb_002477_090 Hb_002477_090 Hb_004934_050--Hb_002477_090 Hb_000340_490 Hb_000340_490 Hb_004934_050--Hb_000340_490 Hb_127743_010 Hb_127743_010 Hb_004934_050--Hb_127743_010 Hb_004934_050--Hb_002456_010 Hb_004208_050 Hb_004208_050 Hb_004934_050--Hb_004208_050 Hb_007416_120 Hb_007416_120 Hb_001671_100--Hb_007416_120 Hb_001671_100--Hb_001876_050 Hb_001671_100--Hb_001999_310 Hb_002232_360 Hb_002232_360 Hb_001671_100--Hb_002232_360 Hb_000392_430 Hb_000392_430 Hb_001671_100--Hb_000392_430 Hb_001314_050 Hb_001314_050 Hb_001671_100--Hb_001314_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.81985 10.1609 5.5353 7.22756 5.56884 6.87099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.25561 8.80852 4.76262 13.4486 8.10347

CAGE analysis