Hb_000922_090

Information

Type -
Description -
Location Contig922: 123581-132712
Sequence    

Annotation

kegg
ID pop:POPTR_0012s08170g
description POPTRDRAFT_570085; hypothetical protein
nr
ID XP_011044306.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Populus euphratica]
swissprot
ID Q9LW63
description Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
trembl
ID B9I396
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s08170g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Populus euphratica]
2 Hb_001141_480 0.2404027796 - - -
3 Hb_003688_080 0.3045582688 - - -
4 Hb_094890_010 0.3803184183 - - -
5 Hb_165666_010 0.3861438801 - - -
6 Hb_000589_160 0.3931001559 - - PREDICTED: expansin-A4 [Jatropha curcas]
7 Hb_000832_230 0.3977727082 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
8 Hb_167711_040 0.3996064176 - - PREDICTED: cucumisin-like [Jatropha curcas]
9 Hb_000368_080 0.4013135378 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
10 Hb_000756_020 0.408685297 - - BnaA05g19440D [Brassica napus]
11 Hb_006420_030 0.4088858574 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
12 Hb_113906_010 0.4091777929 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
13 Hb_000130_090 0.4092541052 - - Anther-specific protein LAT52 precursor, putative [Ricinus communis]
14 Hb_000563_260 0.4111675106 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
15 Hb_002725_060 0.4114373718 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
16 Hb_004994_110 0.4121201709 - - -
17 Hb_003020_170 0.4158879122 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
18 Hb_046703_010 0.4161030965 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
19 Hb_003055_150 0.4164110423 - - serine carboxypeptidase, putative [Ricinus communis]
20 Hb_163268_010 0.4171985369 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]

Gene co-expression network

sample Hb_000922_090 Hb_000922_090 Hb_001141_480 Hb_001141_480 Hb_000922_090--Hb_001141_480 Hb_003688_080 Hb_003688_080 Hb_000922_090--Hb_003688_080 Hb_094890_010 Hb_094890_010 Hb_000922_090--Hb_094890_010 Hb_165666_010 Hb_165666_010 Hb_000922_090--Hb_165666_010 Hb_000589_160 Hb_000589_160 Hb_000922_090--Hb_000589_160 Hb_000832_230 Hb_000832_230 Hb_000922_090--Hb_000832_230 Hb_001141_480--Hb_003688_080 Hb_163268_010 Hb_163268_010 Hb_001141_480--Hb_163268_010 Hb_001741_130 Hb_001741_130 Hb_001141_480--Hb_001741_130 Hb_000756_020 Hb_000756_020 Hb_001141_480--Hb_000756_020 Hb_008505_020 Hb_008505_020 Hb_001141_480--Hb_008505_020 Hb_003688_080--Hb_165666_010 Hb_000352_180 Hb_000352_180 Hb_003688_080--Hb_000352_180 Hb_000368_080 Hb_000368_080 Hb_003688_080--Hb_000368_080 Hb_003688_080--Hb_000832_230 Hb_000249_120 Hb_000249_120 Hb_003688_080--Hb_000249_120 Hb_003055_150 Hb_003055_150 Hb_094890_010--Hb_003055_150 Hb_001141_290 Hb_001141_290 Hb_094890_010--Hb_001141_290 Hb_000500_120 Hb_000500_120 Hb_094890_010--Hb_000500_120 Hb_014720_090 Hb_014720_090 Hb_094890_010--Hb_014720_090 Hb_080749_010 Hb_080749_010 Hb_094890_010--Hb_080749_010 Hb_011081_040 Hb_011081_040 Hb_094890_010--Hb_011081_040 Hb_004195_250 Hb_004195_250 Hb_165666_010--Hb_004195_250 Hb_165666_010--Hb_000368_080 Hb_000866_150 Hb_000866_150 Hb_165666_010--Hb_000866_150 Hb_001304_100 Hb_001304_100 Hb_165666_010--Hb_001304_100 Hb_165666_010--Hb_001141_480 Hb_012053_050 Hb_012053_050 Hb_000589_160--Hb_012053_050 Hb_012053_010 Hb_012053_010 Hb_000589_160--Hb_012053_010 Hb_004100_090 Hb_004100_090 Hb_000589_160--Hb_004100_090 Hb_001369_600 Hb_001369_600 Hb_000589_160--Hb_001369_600 Hb_002105_030 Hb_002105_030 Hb_000589_160--Hb_002105_030 Hb_027337_120 Hb_027337_120 Hb_000589_160--Hb_027337_120 Hb_096225_020 Hb_096225_020 Hb_000832_230--Hb_096225_020 Hb_000638_020 Hb_000638_020 Hb_000832_230--Hb_000638_020 Hb_000380_020 Hb_000380_020 Hb_000832_230--Hb_000380_020 Hb_002983_030 Hb_002983_030 Hb_000832_230--Hb_002983_030 Hb_000193_240 Hb_000193_240 Hb_000832_230--Hb_000193_240 Hb_004453_140 Hb_004453_140 Hb_000832_230--Hb_004453_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0146212 0.0343487 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0636365 0.0591981 0 0

CAGE analysis