Hb_000922_100

Information

Type -
Description -
Location Contig922: 132688-137727
Sequence    

Annotation

kegg
ID pop:POPTR_0012s08180g
description POPTRDRAFT_728586; exonuclease-related family protein
nr
ID XP_012080072.1
description PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
swissprot
ID Q7KWX9
description Putative exosome complex component rrp40 OS=Dictyostelium discoideum GN=exosc3 PE=3 SV=1
trembl
ID A0A067KGZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11480 PE=4 SV=1
Gene Ontology
ID GO:0000178
description exosome complex component rrp40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62483: 132747-137842
cDNA
(Sanger)
(ID:Location)		 013_J02.ab1: 132747-137262 , 022_K13.ab1: 132746-136805 , 053_I02.ab1: 132751-137280

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_100 0.0 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
2 Hb_183086_040 0.0539629083 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
3 Hb_000215_180 0.0875069792 - - hypothetical protein 17 [Hevea brasiliensis]
4 Hb_000896_120 0.0920407504 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
5 Hb_000329_330 0.0934419694 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
6 Hb_000722_040 0.0980774089 - - -
7 Hb_001545_060 0.0983205035 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
8 Hb_000069_100 0.1020106626 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000224_090 0.1026409526 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
10 Hb_001329_210 0.1038471474 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
11 Hb_000398_160 0.1062000327 - - GDP-mannose transporter, putative [Ricinus communis]
12 Hb_001123_120 0.1086104327 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
13 Hb_003376_130 0.1098016366 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
14 Hb_001538_100 0.1098973651 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
15 Hb_010344_040 0.1106864578 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
16 Hb_006831_030 0.1108225182 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
17 Hb_001935_030 0.1114376449 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000780_210 0.113047643 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
19 Hb_000085_330 0.1141571765 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
20 Hb_001623_430 0.1141732692 - - PREDICTED: small acidic protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000922_100 Hb_000922_100 Hb_183086_040 Hb_183086_040 Hb_000922_100--Hb_183086_040 Hb_000215_180 Hb_000215_180 Hb_000922_100--Hb_000215_180 Hb_000896_120 Hb_000896_120 Hb_000922_100--Hb_000896_120 Hb_000329_330 Hb_000329_330 Hb_000922_100--Hb_000329_330 Hb_000722_040 Hb_000722_040 Hb_000922_100--Hb_000722_040 Hb_001545_060 Hb_001545_060 Hb_000922_100--Hb_001545_060 Hb_000780_210 Hb_000780_210 Hb_183086_040--Hb_000780_210 Hb_183086_040--Hb_000896_120 Hb_183086_040--Hb_000215_180 Hb_000085_330 Hb_000085_330 Hb_183086_040--Hb_000085_330 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090 Hb_000215_180--Hb_000780_210 Hb_001377_380 Hb_001377_380 Hb_000215_180--Hb_001377_380 Hb_000215_180--Hb_000896_120 Hb_000106_100 Hb_000106_100 Hb_000215_180--Hb_000106_100 Hb_000300_390 Hb_000300_390 Hb_000896_120--Hb_000300_390 Hb_001232_140 Hb_001232_140 Hb_000896_120--Hb_001232_140 Hb_005663_120 Hb_005663_120 Hb_000896_120--Hb_005663_120 Hb_006573_220 Hb_006573_220 Hb_000329_330--Hb_006573_220 Hb_003376_130 Hb_003376_130 Hb_000329_330--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000329_330--Hb_000069_100 Hb_148200_010 Hb_148200_010 Hb_000329_330--Hb_148200_010 Hb_003376_030 Hb_003376_030 Hb_000329_330--Hb_003376_030 Hb_002097_060 Hb_002097_060 Hb_000329_330--Hb_002097_060 Hb_003561_030 Hb_003561_030 Hb_000722_040--Hb_003561_030 Hb_000975_110 Hb_000975_110 Hb_000722_040--Hb_000975_110 Hb_000722_040--Hb_000224_090 Hb_000024_030 Hb_000024_030 Hb_000722_040--Hb_000024_030 Hb_001427_230 Hb_001427_230 Hb_000722_040--Hb_001427_230 Hb_011161_050 Hb_011161_050 Hb_000722_040--Hb_011161_050 Hb_001545_060--Hb_003376_130 Hb_001545_060--Hb_000224_090 Hb_001545_060--Hb_000069_100 Hb_017862_010 Hb_017862_010 Hb_001545_060--Hb_017862_010 Hb_000363_200 Hb_000363_200 Hb_001545_060--Hb_000363_200 Hb_000193_200 Hb_000193_200 Hb_001545_060--Hb_000193_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.3892 9.78044 8.23667 22.1354 21.4646 39.5781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
157.819 139.321 92.7131 33.9855 5.92758

CAGE analysis