Hb_000922_130

Information

Type -
Description -
Location Contig922: 151806-154143
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04925g
description hypothetical protein
nr
ID XP_006379569.1
description hypothetical protein POPTR_0008s04925g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G526
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s04925g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_130 0.0 - - hypothetical protein POPTR_0008s04925g [Populus trichocarpa]
2 Hb_005723_040 0.2432333353 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
3 Hb_063912_010 0.2471346024 - - PREDICTED: elongation factor 1-alpha-like, partial [Cucumis sativus]
4 Hb_001195_390 0.2751517126 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Populus euphratica]
5 Hb_046440_010 0.2884830684 - - hypothetical protein JCGZ_06190 [Jatropha curcas]
6 Hb_000939_010 0.2921106674 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
7 Hb_002243_040 0.3099424073 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00227 [Jatropha curcas]
8 Hb_024272_010 0.3179637244 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
9 Hb_176022_010 0.3183736135 - - -
10 Hb_002490_050 0.3189570269 - - Os02g0182500, partial [Oryza sativa Japonica Group]
11 Hb_010317_030 0.3196220516 - - unknown [Picea sitchensis]
12 Hb_000943_030 0.3337804852 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008147_010 0.3354985534 - - hypothetical protein, partial [Pseudomonas fluorescens]
14 Hb_054936_010 0.3357115017 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
15 Hb_184212_010 0.3410910017 - - PREDICTED: uncharacterized protein LOC105113658 [Populus euphratica]
16 Hb_006344_010 0.3447540429 - - -
17 Hb_006495_080 0.346069455 - - hypothetical protein PRUPE_ppb025438mg, partial [Prunus persica]
18 Hb_004321_010 0.3476096217 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_130788_010 0.3499058327 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
20 Hb_003752_050 0.3505248159 - - hypothetical protein JCGZ_15078 [Jatropha curcas]

Gene co-expression network

sample Hb_000922_130 Hb_000922_130 Hb_005723_040 Hb_005723_040 Hb_000922_130--Hb_005723_040 Hb_063912_010 Hb_063912_010 Hb_000922_130--Hb_063912_010 Hb_001195_390 Hb_001195_390 Hb_000922_130--Hb_001195_390 Hb_046440_010 Hb_046440_010 Hb_000922_130--Hb_046440_010 Hb_000939_010 Hb_000939_010 Hb_000922_130--Hb_000939_010 Hb_002243_040 Hb_002243_040 Hb_000922_130--Hb_002243_040 Hb_005723_040--Hb_046440_010 Hb_000943_030 Hb_000943_030 Hb_005723_040--Hb_000943_030 Hb_013399_080 Hb_013399_080 Hb_005723_040--Hb_013399_080 Hb_071869_010 Hb_071869_010 Hb_005723_040--Hb_071869_010 Hb_000397_100 Hb_000397_100 Hb_005723_040--Hb_000397_100 Hb_176022_010 Hb_176022_010 Hb_063912_010--Hb_176022_010 Hb_130788_010 Hb_130788_010 Hb_063912_010--Hb_130788_010 Hb_002490_050 Hb_002490_050 Hb_063912_010--Hb_002490_050 Hb_063912_010--Hb_001195_390 Hb_005671_030 Hb_005671_030 Hb_063912_010--Hb_005671_030 Hb_001195_390--Hb_002243_040 Hb_013925_010 Hb_013925_010 Hb_001195_390--Hb_013925_010 Hb_006344_010 Hb_006344_010 Hb_001195_390--Hb_006344_010 Hb_140572_010 Hb_140572_010 Hb_001195_390--Hb_140572_010 Hb_001195_390--Hb_046440_010 Hb_000160_200 Hb_000160_200 Hb_001195_390--Hb_000160_200 Hb_046440_010--Hb_000943_030 Hb_000415_060 Hb_000415_060 Hb_046440_010--Hb_000415_060 Hb_046440_010--Hb_002243_040 Hb_000326_030 Hb_000326_030 Hb_046440_010--Hb_000326_030 Hb_046440_010--Hb_000397_100 Hb_000939_010--Hb_000415_060 Hb_000347_500 Hb_000347_500 Hb_000939_010--Hb_000347_500 Hb_000061_390 Hb_000061_390 Hb_000939_010--Hb_000061_390 Hb_000939_010--Hb_071869_010 Hb_000445_080 Hb_000445_080 Hb_000939_010--Hb_000445_080 Hb_000768_060 Hb_000768_060 Hb_000939_010--Hb_000768_060 Hb_002243_040--Hb_130788_010 Hb_005470_010 Hb_005470_010 Hb_002243_040--Hb_005470_010 Hb_002243_040--Hb_000160_200 Hb_001946_280 Hb_001946_280 Hb_002243_040--Hb_001946_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.57315 0 0.366677 1.71148 0 9.83312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 7.10453 0.117081 0.814477

CAGE analysis