Hb_000922_170

Information

Type -
Description -
Location Contig922: 178257-179129
Sequence    

Annotation

kegg
ID vvi:100243388
description uncharacterized LOC100243388
nr
ID XP_012080066.1
description PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11475 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_170 0.0 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
2 Hb_000046_260 0.1068581032 - - acyl carrier protein, putative [Ricinus communis]
3 Hb_000188_130 0.1175027505 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
4 Hb_001045_080 0.1243106011 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
5 Hb_004116_080 0.1257938866 - - ATATH9, putative [Ricinus communis]
6 Hb_000161_050 0.1292669391 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007140_020 0.1297097653 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
8 Hb_007416_220 0.1304117555 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
9 Hb_000045_190 0.1306536692 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
10 Hb_002759_230 0.1314066288 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
11 Hb_003988_040 0.1325284097 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
12 Hb_001341_130 0.1345800913 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003893_090 0.1358479277 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
14 Hb_000963_030 0.1361533372 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
15 Hb_003125_150 0.1363970797 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
16 Hb_000526_020 0.1382917616 - - thioredoxin-like family protein [Hevea brasiliensis]
17 Hb_004958_050 0.1384851081 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
18 Hb_000062_580 0.1404386178 - - ATP binding protein, putative [Ricinus communis]
19 Hb_003607_170 0.1413156459 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
20 Hb_011689_050 0.1455282379 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]

Gene co-expression network

sample Hb_000922_170 Hb_000922_170 Hb_000046_260 Hb_000046_260 Hb_000922_170--Hb_000046_260 Hb_000188_130 Hb_000188_130 Hb_000922_170--Hb_000188_130 Hb_001045_080 Hb_001045_080 Hb_000922_170--Hb_001045_080 Hb_004116_080 Hb_004116_080 Hb_000922_170--Hb_004116_080 Hb_000161_050 Hb_000161_050 Hb_000922_170--Hb_000161_050 Hb_007140_020 Hb_007140_020 Hb_000922_170--Hb_007140_020 Hb_000046_260--Hb_001045_080 Hb_000046_260--Hb_004116_080 Hb_000312_090 Hb_000312_090 Hb_000046_260--Hb_000312_090 Hb_000045_190 Hb_000045_190 Hb_000046_260--Hb_000045_190 Hb_001687_040 Hb_001687_040 Hb_000046_260--Hb_001687_040 Hb_002214_050 Hb_002214_050 Hb_000046_260--Hb_002214_050 Hb_001341_130 Hb_001341_130 Hb_000188_130--Hb_001341_130 Hb_000188_130--Hb_000045_190 Hb_002759_230 Hb_002759_230 Hb_000188_130--Hb_002759_230 Hb_001153_080 Hb_001153_080 Hb_000188_130--Hb_001153_080 Hb_000188_130--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000188_130--Hb_002529_100 Hb_003125_150 Hb_003125_150 Hb_001045_080--Hb_003125_150 Hb_009851_100 Hb_009851_100 Hb_001045_080--Hb_009851_100 Hb_001268_140 Hb_001268_140 Hb_001045_080--Hb_001268_140 Hb_001045_080--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_001045_080--Hb_001269_270 Hb_004116_080--Hb_000045_190 Hb_003018_120 Hb_003018_120 Hb_004116_080--Hb_003018_120 Hb_000798_030 Hb_000798_030 Hb_004116_080--Hb_000798_030 Hb_000160_130 Hb_000160_130 Hb_004116_080--Hb_000160_130 Hb_004116_080--Hb_000188_130 Hb_002781_020 Hb_002781_020 Hb_000161_050--Hb_002781_020 Hb_000161_050--Hb_001153_080 Hb_000212_260 Hb_000212_260 Hb_000161_050--Hb_000212_260 Hb_011689_050 Hb_011689_050 Hb_000161_050--Hb_011689_050 Hb_010172_030 Hb_010172_030 Hb_000161_050--Hb_010172_030 Hb_000161_050--Hb_009851_100 Hb_000035_430 Hb_000035_430 Hb_007140_020--Hb_000035_430 Hb_000012_130 Hb_000012_130 Hb_007140_020--Hb_000012_130 Hb_004738_010 Hb_004738_010 Hb_007140_020--Hb_004738_010 Hb_007140_020--Hb_000188_130 Hb_007140_020--Hb_001687_040 Hb_001135_080 Hb_001135_080 Hb_007140_020--Hb_001135_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8593 2.01996 1.69241 3.39978 2.11166 4.74545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9488 20.5923 6.64321 1.81516 1.24547

CAGE analysis