Hb_000922_250

Information

Type -
Description -
Location Contig922: 220014-221291
Sequence    

Annotation

kegg
ID rcu:RCOM_1510500
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002511392.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9LR72
description Putative pentatricopeptide repeat-containing protein At1g03510 OS=Arabidopsis thaliana GN=PCMP-E3 PE=3 SV=1
trembl
ID B9RB17
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1510500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62492: 218351-221313 , PASA_asmbl_62494: 221894-234859 , PASA_asmbl_62495: 221894-226705
cDNA
(Sanger)
(ID:Location)		 007_J19.ab1: 221894-222223

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_250 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_145022_010 0.0785587166 - - hypothetical protein JCGZ_22699 [Jatropha curcas]
3 Hb_011883_020 0.084553474 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
4 Hb_003528_050 0.0851815276 - - protein transporter, putative [Ricinus communis]
5 Hb_001691_200 0.0873026379 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
6 Hb_004934_050 0.0883564245 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
7 Hb_002631_210 0.0884526377 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
8 Hb_004208_050 0.0899893784 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
9 Hb_000009_410 0.0903650027 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
10 Hb_001157_160 0.0905188921 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
11 Hb_005408_030 0.0907603536 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
12 Hb_002411_110 0.0914647913 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
13 Hb_000640_040 0.0942555081 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
14 Hb_000490_060 0.0958081832 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
15 Hb_008948_020 0.0963980408 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
16 Hb_003228_110 0.0966434368 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
17 Hb_001716_040 0.0986052779 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
18 Hb_006531_020 0.0987817952 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
19 Hb_001269_380 0.0988216453 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
20 Hb_007441_160 0.0992431633 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000922_250 Hb_000922_250 Hb_145022_010 Hb_145022_010 Hb_000922_250--Hb_145022_010 Hb_011883_020 Hb_011883_020 Hb_000922_250--Hb_011883_020 Hb_003528_050 Hb_003528_050 Hb_000922_250--Hb_003528_050 Hb_001691_200 Hb_001691_200 Hb_000922_250--Hb_001691_200 Hb_004934_050 Hb_004934_050 Hb_000922_250--Hb_004934_050 Hb_002631_210 Hb_002631_210 Hb_000922_250--Hb_002631_210 Hb_000599_190 Hb_000599_190 Hb_145022_010--Hb_000599_190 Hb_000471_140 Hb_000471_140 Hb_145022_010--Hb_000471_140 Hb_001488_180 Hb_001488_180 Hb_145022_010--Hb_001488_180 Hb_005186_040 Hb_005186_040 Hb_145022_010--Hb_005186_040 Hb_002007_160 Hb_002007_160 Hb_145022_010--Hb_002007_160 Hb_005074_020 Hb_005074_020 Hb_011883_020--Hb_005074_020 Hb_011883_020--Hb_002631_210 Hb_027506_010 Hb_027506_010 Hb_011883_020--Hb_027506_010 Hb_004208_050 Hb_004208_050 Hb_011883_020--Hb_004208_050 Hb_004096_110 Hb_004096_110 Hb_011883_020--Hb_004096_110 Hb_011883_020--Hb_001691_200 Hb_000979_220 Hb_000979_220 Hb_003528_050--Hb_000979_220 Hb_003528_050--Hb_027506_010 Hb_003528_050--Hb_011883_020 Hb_000510_340 Hb_000510_340 Hb_003528_050--Hb_000510_340 Hb_000173_190 Hb_000173_190 Hb_003528_050--Hb_000173_190 Hb_001300_280 Hb_001300_280 Hb_003528_050--Hb_001300_280 Hb_001691_200--Hb_002631_210 Hb_001691_200--Hb_004208_050 Hb_002609_080 Hb_002609_080 Hb_001691_200--Hb_002609_080 Hb_005181_050 Hb_005181_050 Hb_001691_200--Hb_005181_050 Hb_000270_170 Hb_000270_170 Hb_001691_200--Hb_000270_170 Hb_002477_090 Hb_002477_090 Hb_004934_050--Hb_002477_090 Hb_000340_490 Hb_000340_490 Hb_004934_050--Hb_000340_490 Hb_000920_300 Hb_000920_300 Hb_004934_050--Hb_000920_300 Hb_127743_010 Hb_127743_010 Hb_004934_050--Hb_127743_010 Hb_002456_010 Hb_002456_010 Hb_004934_050--Hb_002456_010 Hb_004934_050--Hb_004208_050 Hb_002686_140 Hb_002686_140 Hb_002631_210--Hb_002686_140 Hb_023344_160 Hb_023344_160 Hb_002631_210--Hb_023344_160 Hb_002631_210--Hb_005074_020 Hb_005408_030 Hb_005408_030 Hb_002631_210--Hb_005408_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.827909 3.44866 2.00253 1.57484 1.20895 1.53253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35514 1.80632 2.09975 3.45987 2.95154

CAGE analysis