Hb_000922_260

Information

Type -
Description -
Location Contig922: 221888-234946
Sequence    

Annotation

kegg
ID rcu:RCOM_1510490
description Pantothenate kinase, putative (EC:2.7.1.33)
nr
ID XP_012080051.1
description PREDICTED: pantothenate kinase 2 [Jatropha curcas]
swissprot
ID Q8L5Y9
description Pantothenate kinase 2 OS=Arabidopsis thaliana GN=PANK2 PE=1 SV=2
trembl
ID A0A067K4M4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11468 PE=4 SV=1
Gene Ontology
ID GO:0005829
description pantothenate kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62494: 221894-234859 , PASA_asmbl_62495: 221894-226705
cDNA
(Sanger)
(ID:Location)		 007_J19.ab1: 221894-222223

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_260 0.0 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
2 Hb_003490_050 0.0818486898 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
3 Hb_000668_110 0.0891804679 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
4 Hb_000256_110 0.0975747834 - - PREDICTED: aspartate aminotransferase, chloroplastic [Jatropha curcas]
5 Hb_002232_490 0.0985376083 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
6 Hb_003549_050 0.1002413964 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
7 Hb_001405_080 0.1071127624 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
8 Hb_001564_070 0.1077469513 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
9 Hb_000896_050 0.1117948319 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
10 Hb_002026_070 0.1122228916 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
11 Hb_014497_060 0.1148511786 - - phosphofructokinase, putative [Ricinus communis]
12 Hb_012325_010 0.1157462696 - - hypothetical protein RCOM_0068670 [Ricinus communis]
13 Hb_000109_260 0.1168738504 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
14 Hb_000125_180 0.117922073 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
15 Hb_098533_010 0.1195842191 - - hypothetical protein L484_003492 [Morus notabilis]
16 Hb_001473_170 0.1208743671 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
17 Hb_001235_130 0.1214045524 - - -
18 Hb_004111_030 0.1243930496 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Jatropha curcas]
19 Hb_005571_010 0.1257346062 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
20 Hb_005854_040 0.1260894752 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000922_260 Hb_000922_260 Hb_003490_050 Hb_003490_050 Hb_000922_260--Hb_003490_050 Hb_000668_110 Hb_000668_110 Hb_000922_260--Hb_000668_110 Hb_000256_110 Hb_000256_110 Hb_000922_260--Hb_000256_110 Hb_002232_490 Hb_002232_490 Hb_000922_260--Hb_002232_490 Hb_003549_050 Hb_003549_050 Hb_000922_260--Hb_003549_050 Hb_001405_080 Hb_001405_080 Hb_000922_260--Hb_001405_080 Hb_003490_050--Hb_002232_490 Hb_003490_060 Hb_003490_060 Hb_003490_050--Hb_003490_060 Hb_000109_260 Hb_000109_260 Hb_003490_050--Hb_000109_260 Hb_005571_010 Hb_005571_010 Hb_003490_050--Hb_005571_010 Hb_001341_010 Hb_001341_010 Hb_003490_050--Hb_001341_010 Hb_000668_110--Hb_000256_110 Hb_002026_070 Hb_002026_070 Hb_000668_110--Hb_002026_070 Hb_000668_110--Hb_003490_050 Hb_000668_110--Hb_003549_050 Hb_011853_010 Hb_011853_010 Hb_000668_110--Hb_011853_010 Hb_000739_210 Hb_000739_210 Hb_000256_110--Hb_000739_210 Hb_014497_060 Hb_014497_060 Hb_000256_110--Hb_014497_060 Hb_000256_110--Hb_003490_050 Hb_000256_110--Hb_001405_080 Hb_002392_020 Hb_002392_020 Hb_002232_490--Hb_002392_020 Hb_001226_130 Hb_001226_130 Hb_002232_490--Hb_001226_130 Hb_024570_040 Hb_024570_040 Hb_002232_490--Hb_024570_040 Hb_002232_490--Hb_000109_260 Hb_002232_490--Hb_003490_060 Hb_003549_050--Hb_001405_080 Hb_001425_010 Hb_001425_010 Hb_003549_050--Hb_001425_010 Hb_052946_010 Hb_052946_010 Hb_003549_050--Hb_052946_010 Hb_004111_030 Hb_004111_030 Hb_003549_050--Hb_004111_030 Hb_006816_010 Hb_006816_010 Hb_003549_050--Hb_006816_010 Hb_001405_080--Hb_004111_030 Hb_004041_030 Hb_004041_030 Hb_001405_080--Hb_004041_030 Hb_002150_020 Hb_002150_020 Hb_001405_080--Hb_002150_020 Hb_001405_080--Hb_052946_010 Hb_002811_190 Hb_002811_190 Hb_001405_080--Hb_002811_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52793 6.13548 7.26646 9.2586 2.95295 3.92559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26634 2.72984 3.18913 17.5721 19.1519

CAGE analysis