Hb_000922_310

Information

Type transcription factor
Description TF Family: MYB
Location Contig922: 262682-264529
Sequence    

Annotation

kegg
ID rcu:RCOM_1510450
description myb119, putative
nr
ID XP_012080530.1
description PREDICTED: transcription factor MYB98-like [Jatropha curcas]
swissprot
ID Q9S7L2
description Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1
trembl
ID B9RB12
description Myb119, putative OS=Ricinus communis GN=RCOM_1510450 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb98-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_310 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]
2 Hb_034569_020 0.1176588067 - - -
3 Hb_004899_280 0.2086444872 - - -
4 Hb_046727_010 0.2114458968 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_080765_020 0.2114476753 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_000098_280 0.2120135782 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
7 Hb_007008_020 0.2125212716 - - -
8 Hb_000953_150 0.2125899567 - - -
9 Hb_009742_010 0.2132950581 - - -
10 Hb_000100_050 0.2163610005 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_011978_010 0.2165150428 - - hypothetical protein JCGZ_03852 [Jatropha curcas]
12 Hb_000375_380 0.216590769 - - -
13 Hb_004324_380 0.2173507445 - - -
14 Hb_027393_020 0.2203434695 - - -
15 Hb_007963_050 0.2282793475 - - -
16 Hb_009693_040 0.2308211289 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Brassica rapa]
17 Hb_003607_030 0.2351606122 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
18 Hb_131949_010 0.2376445852 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
19 Hb_171108_010 0.2501087267 - - -
20 Hb_002163_060 0.2531540291 - - -

Gene co-expression network

sample Hb_000922_310 Hb_000922_310 Hb_034569_020 Hb_034569_020 Hb_000922_310--Hb_034569_020 Hb_004899_280 Hb_004899_280 Hb_000922_310--Hb_004899_280 Hb_046727_010 Hb_046727_010 Hb_000922_310--Hb_046727_010 Hb_080765_020 Hb_080765_020 Hb_000922_310--Hb_080765_020 Hb_000098_280 Hb_000098_280 Hb_000922_310--Hb_000098_280 Hb_007008_020 Hb_007008_020 Hb_000922_310--Hb_007008_020 Hb_009742_010 Hb_009742_010 Hb_034569_020--Hb_009742_010 Hb_034569_020--Hb_004899_280 Hb_131949_010 Hb_131949_010 Hb_034569_020--Hb_131949_010 Hb_010979_010 Hb_010979_010 Hb_034569_020--Hb_010979_010 Hb_184798_040 Hb_184798_040 Hb_034569_020--Hb_184798_040 Hb_004899_280--Hb_131949_010 Hb_005975_020 Hb_005975_020 Hb_004899_280--Hb_005975_020 Hb_004899_280--Hb_009742_010 Hb_003362_060 Hb_003362_060 Hb_004899_280--Hb_003362_060 Hb_046727_010--Hb_080765_020 Hb_046727_010--Hb_000098_280 Hb_046727_010--Hb_007008_020 Hb_000953_150 Hb_000953_150 Hb_046727_010--Hb_000953_150 Hb_000100_050 Hb_000100_050 Hb_046727_010--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_046727_010--Hb_011978_010 Hb_080765_020--Hb_000098_280 Hb_080765_020--Hb_000953_150 Hb_080765_020--Hb_007008_020 Hb_080765_020--Hb_000100_050 Hb_080765_020--Hb_011978_010 Hb_000098_280--Hb_000953_150 Hb_000098_280--Hb_007008_020 Hb_000098_280--Hb_000100_050 Hb_000098_280--Hb_011978_010 Hb_007008_020--Hb_000100_050 Hb_007008_020--Hb_011978_010 Hb_000375_380 Hb_000375_380 Hb_007008_020--Hb_000375_380 Hb_004324_380 Hb_004324_380 Hb_007008_020--Hb_004324_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0781778 0.0129643 0 0 0.0585833 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis