Hb_000922_330

Information

Type -
Description -
Location Contig922: 278594-281661
Sequence    

Annotation

kegg
ID rcu:RCOM_1510430
description ATP binding protein, putative
nr
ID XP_012080048.1
description PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
swissprot
ID Q9LDD1
description Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana GN=BRG3 PE=1 SV=1
trembl
ID A0A067K4D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11462 PE=4 SV=1
Gene Ontology
ID GO:0005634
description boi-related e3 ubiquitin-protein ligase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62505: 279365-280041 , PASA_asmbl_62506: 278559-281655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_330 0.0 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
2 Hb_003641_050 0.0646479477 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
3 Hb_014720_160 0.0667095717 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
4 Hb_000085_060 0.0871278747 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
5 Hb_000679_130 0.0938556249 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_005662_030 0.0939743044 - - protein with unknown function [Ricinus communis]
7 Hb_002527_030 0.0967954605 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
8 Hb_006064_010 0.0971175743 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
9 Hb_000367_130 0.0980941512 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000649_050 0.0983034267 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
11 Hb_000481_040 0.1009146104 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
12 Hb_001959_070 0.1024154876 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
13 Hb_003728_080 0.102543482 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
14 Hb_003001_120 0.1026795355 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
15 Hb_001638_290 0.1027572657 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
16 Hb_000010_090 0.1031689884 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
17 Hb_001616_080 0.1038426288 - - Oleoyl-acyl carrier protein thioesterase, putative [Ricinus communis]
18 Hb_003044_100 0.1043842806 - - hypothetical protein F383_08446 [Gossypium arboreum]
19 Hb_001832_190 0.1044067475 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005829_010 0.1044509162 - - PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]

Gene co-expression network

sample Hb_000922_330 Hb_000922_330 Hb_003641_050 Hb_003641_050 Hb_000922_330--Hb_003641_050 Hb_014720_160 Hb_014720_160 Hb_000922_330--Hb_014720_160 Hb_000085_060 Hb_000085_060 Hb_000922_330--Hb_000085_060 Hb_000679_130 Hb_000679_130 Hb_000922_330--Hb_000679_130 Hb_005662_030 Hb_005662_030 Hb_000922_330--Hb_005662_030 Hb_002527_030 Hb_002527_030 Hb_000922_330--Hb_002527_030 Hb_000481_040 Hb_000481_040 Hb_003641_050--Hb_000481_040 Hb_003641_050--Hb_005662_030 Hb_000649_050 Hb_000649_050 Hb_003641_050--Hb_000649_050 Hb_007477_080 Hb_007477_080 Hb_003641_050--Hb_007477_080 Hb_001100_050 Hb_001100_050 Hb_003641_050--Hb_001100_050 Hb_007547_010 Hb_007547_010 Hb_014720_160--Hb_007547_010 Hb_014720_160--Hb_000085_060 Hb_003609_040 Hb_003609_040 Hb_014720_160--Hb_003609_040 Hb_000001_020 Hb_000001_020 Hb_014720_160--Hb_000001_020 Hb_014720_160--Hb_005662_030 Hb_001124_120 Hb_001124_120 Hb_000085_060--Hb_001124_120 Hb_076787_010 Hb_076787_010 Hb_000085_060--Hb_076787_010 Hb_031939_010 Hb_031939_010 Hb_000085_060--Hb_031939_010 Hb_001014_010 Hb_001014_010 Hb_000085_060--Hb_001014_010 Hb_003406_010 Hb_003406_010 Hb_000085_060--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000085_060--Hb_007218_080 Hb_000025_110 Hb_000025_110 Hb_000679_130--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000679_130--Hb_001444_010 Hb_000367_130 Hb_000367_130 Hb_000679_130--Hb_000367_130 Hb_001599_030 Hb_001599_030 Hb_000679_130--Hb_001599_030 Hb_007262_020 Hb_007262_020 Hb_000679_130--Hb_007262_020 Hb_006915_060 Hb_006915_060 Hb_000679_130--Hb_006915_060 Hb_001862_190 Hb_001862_190 Hb_005662_030--Hb_001862_190 Hb_000620_010 Hb_000620_010 Hb_005662_030--Hb_000620_010 Hb_000184_110 Hb_000184_110 Hb_005662_030--Hb_000184_110 Hb_000028_610 Hb_000028_610 Hb_005662_030--Hb_000028_610 Hb_006065_020 Hb_006065_020 Hb_005662_030--Hb_006065_020 Hb_001017_040 Hb_001017_040 Hb_005662_030--Hb_001017_040 Hb_000345_170 Hb_000345_170 Hb_002527_030--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_002527_030--Hb_000116_180 Hb_108216_040 Hb_108216_040 Hb_002527_030--Hb_108216_040 Hb_000645_050 Hb_000645_050 Hb_002527_030--Hb_000645_050 Hb_000051_070 Hb_000051_070 Hb_002527_030--Hb_000051_070 Hb_002527_030--Hb_000085_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4051 3.57472 7.32104 5.51123 14.4321 17.4359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.999 9.68083 10.4259 3.35385 8.95088

CAGE analysis