Hb_000922_360

Information

Type -
Description -
Location Contig922: 294684-296000
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0035091
description phox domain-containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62511: 294582-302599 , PASA_asmbl_62512: 294582-302599 , PASA_asmbl_62513: 294582-302570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_360 0.0 - - -
2 Hb_003464_090 0.0658848561 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
3 Hb_011618_090 0.0671248865 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
4 Hb_000011_100 0.0697570122 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
5 Hb_003370_030 0.0706569455 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
6 Hb_001006_330 0.0721276803 - - sodium/hydrogen exchanger plant, putative [Ricinus communis]
7 Hb_001430_080 0.0740970439 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
8 Hb_003835_070 0.0749608577 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
9 Hb_001114_140 0.0762473614 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
10 Hb_000696_230 0.0763768314 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
11 Hb_000363_400 0.07828676 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
12 Hb_000025_410 0.0785762656 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
13 Hb_000565_040 0.0792770173 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
14 Hb_000317_370 0.079467919 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
15 Hb_007163_120 0.0795193201 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
16 Hb_005000_260 0.0807554946 - - recA family protein [Populus trichocarpa]
17 Hb_002890_290 0.0817813949 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
18 Hb_002217_170 0.0823267493 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
19 Hb_002900_090 0.0826593574 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
20 Hb_005779_010 0.083469577 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000922_360 Hb_000922_360 Hb_003464_090 Hb_003464_090 Hb_000922_360--Hb_003464_090 Hb_011618_090 Hb_011618_090 Hb_000922_360--Hb_011618_090 Hb_000011_100 Hb_000011_100 Hb_000922_360--Hb_000011_100 Hb_003370_030 Hb_003370_030 Hb_000922_360--Hb_003370_030 Hb_001006_330 Hb_001006_330 Hb_000922_360--Hb_001006_330 Hb_001430_080 Hb_001430_080 Hb_000922_360--Hb_001430_080 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110 Hb_003835_070 Hb_003835_070 Hb_011618_090--Hb_003835_070 Hb_000317_370 Hb_000317_370 Hb_011618_090--Hb_000317_370 Hb_000579_230 Hb_000579_230 Hb_011618_090--Hb_000579_230 Hb_003544_060 Hb_003544_060 Hb_011618_090--Hb_003544_060 Hb_007083_030 Hb_007083_030 Hb_011618_090--Hb_007083_030 Hb_004267_040 Hb_004267_040 Hb_000011_100--Hb_004267_040 Hb_000710_040 Hb_000710_040 Hb_000011_100--Hb_000710_040 Hb_000011_100--Hb_001430_080 Hb_000398_080 Hb_000398_080 Hb_000011_100--Hb_000398_080 Hb_000120_280 Hb_000120_280 Hb_000011_100--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_000011_100--Hb_000563_130 Hb_003370_030--Hb_007163_120 Hb_001114_140 Hb_001114_140 Hb_003370_030--Hb_001114_140 Hb_005000_260 Hb_005000_260 Hb_003370_030--Hb_005000_260 Hb_033772_030 Hb_033772_030 Hb_003370_030--Hb_033772_030 Hb_001266_100 Hb_001266_100 Hb_003370_030--Hb_001266_100 Hb_003370_030--Hb_003464_090 Hb_000696_230 Hb_000696_230 Hb_001006_330--Hb_000696_230 Hb_001006_330--Hb_000011_100 Hb_001821_160 Hb_001821_160 Hb_001006_330--Hb_001821_160 Hb_000441_120 Hb_000441_120 Hb_001006_330--Hb_000441_120 Hb_000816_250 Hb_000816_250 Hb_001006_330--Hb_000816_250 Hb_001277_020 Hb_001277_020 Hb_001430_080--Hb_001277_020 Hb_004976_010 Hb_004976_010 Hb_001430_080--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001430_080--Hb_000645_170 Hb_001430_080--Hb_003835_070 Hb_000879_040 Hb_000879_040 Hb_001430_080--Hb_000879_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.78974 10.6066 7.29485 6.60737 7.75646 5.71662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.78031 6.46898 6.20058 10.2655 6.12857

CAGE analysis