Hb_000922_370

Information

Type -
Description -
Location Contig922: 297051-302763
Sequence    

Annotation

kegg
ID rcu:RCOM_1510400
description hypothetical protein
nr
ID XP_012080045.1
description PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
swissprot
ID Q08AW4
description Pleckstrin homology domain-containing family M member 3 OS=Xenopus laevis GN=plekhm3 PE=2 SV=1
trembl
ID A0A067K7S5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11459 PE=4 SV=1
Gene Ontology
ID GO:0035091
description phox domain-containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62511: 294582-302599 , PASA_asmbl_62512: 294582-302599 , PASA_asmbl_62513: 294582-302570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_370 0.0 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
2 Hb_003044_020 0.0515974628 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
3 Hb_007426_130 0.0534467775 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
4 Hb_002329_040 0.0540163202 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
5 Hb_003362_070 0.0540934464 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
6 Hb_002174_020 0.05652072 - - ring finger protein, putative [Ricinus communis]
7 Hb_000160_290 0.0567103984 - - unnamed protein product [Vitis vinifera]
8 Hb_000183_020 0.0604980301 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
9 Hb_006252_020 0.0629245051 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
10 Hb_009476_040 0.0658830345 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004935_030 0.066902827 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
12 Hb_000563_640 0.0675495911 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
13 Hb_000283_070 0.0694928624 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
14 Hb_001454_280 0.070850512 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
15 Hb_000613_080 0.070899989 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
16 Hb_003966_030 0.0710166187 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
17 Hb_002107_070 0.0712928344 - - hypothetical protein RCOM_1598630 [Ricinus communis]
18 Hb_002615_090 0.0717876948 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
19 Hb_005321_020 0.0728687845 - - splicing factor-related family protein [Populus trichocarpa]
20 Hb_001195_320 0.0729342371 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]

Gene co-expression network

sample Hb_000922_370 Hb_000922_370 Hb_003044_020 Hb_003044_020 Hb_000922_370--Hb_003044_020 Hb_007426_130 Hb_007426_130 Hb_000922_370--Hb_007426_130 Hb_002329_040 Hb_002329_040 Hb_000922_370--Hb_002329_040 Hb_003362_070 Hb_003362_070 Hb_000922_370--Hb_003362_070 Hb_002174_020 Hb_002174_020 Hb_000922_370--Hb_002174_020 Hb_000160_290 Hb_000160_290 Hb_000922_370--Hb_000160_290 Hb_000183_020 Hb_000183_020 Hb_003044_020--Hb_000183_020 Hb_006252_020 Hb_006252_020 Hb_003044_020--Hb_006252_020 Hb_003966_030 Hb_003966_030 Hb_003044_020--Hb_003966_030 Hb_003044_020--Hb_003362_070 Hb_003044_020--Hb_002329_040 Hb_007426_130--Hb_002329_040 Hb_009615_170 Hb_009615_170 Hb_007426_130--Hb_009615_170 Hb_007426_130--Hb_000183_020 Hb_001821_090 Hb_001821_090 Hb_007426_130--Hb_001821_090 Hb_000261_030 Hb_000261_030 Hb_007426_130--Hb_000261_030 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_000740_100 Hb_000740_100 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_002329_040--Hb_000183_020 Hb_016898_010 Hb_016898_010 Hb_003362_070--Hb_016898_010 Hb_004935_030 Hb_004935_030 Hb_003362_070--Hb_004935_030 Hb_048476_180 Hb_048476_180 Hb_003362_070--Hb_048476_180 Hb_003362_070--Hb_003966_030 Hb_008112_030 Hb_008112_030 Hb_002174_020--Hb_008112_030 Hb_001454_280 Hb_001454_280 Hb_002174_020--Hb_001454_280 Hb_002174_020--Hb_006252_020 Hb_002174_020--Hb_000160_290 Hb_005731_090 Hb_005731_090 Hb_002174_020--Hb_005731_090 Hb_007635_030 Hb_007635_030 Hb_002174_020--Hb_007635_030 Hb_001417_050 Hb_001417_050 Hb_000160_290--Hb_001417_050 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_000160_290--Hb_003044_020 Hb_001493_040 Hb_001493_040 Hb_000160_290--Hb_001493_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.16415 10.1643 3.80127 6.71848 9.28843 12.8787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.50889 3.76508 6.3053 7.61592 6.06585

CAGE analysis