Hb_000922_390

Information

Type -
Description -
Location Contig922: 311080-313615
Sequence    

Annotation

kegg
ID rcu:RCOM_1510380
description hypothetical protein
nr
ID XP_012080042.1
description PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4D3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11457 PE=4 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial import inner membrane translocase subunit tim17 tim22 tim23 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62518: 310941-313489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_390 0.0 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
2 Hb_011671_450 0.0849377552 - - -
3 Hb_001811_030 0.0883170298 - - Beta-ureidopropionase, putative [Ricinus communis]
4 Hb_093458_050 0.0988541194 - - glutathione reductase [Hevea brasiliensis]
5 Hb_009193_030 0.1006204001 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
6 Hb_002600_040 0.1037323967 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
7 Hb_000820_090 0.1048594973 - - -
8 Hb_000291_080 0.1083554239 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
9 Hb_001897_040 0.1100449539 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
10 Hb_148113_010 0.1102531079 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
11 Hb_000108_070 0.112618931 - - alpha-tubulin 1 [Hevea brasiliensis]
12 Hb_004079_030 0.117103391 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
13 Hb_000023_090 0.1202271964 - - mak, putative [Ricinus communis]
14 Hb_008616_070 0.1203564277 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
15 Hb_000731_260 0.1208091394 - - hypothetical protein RCOM_0905090 [Ricinus communis]
16 Hb_002239_060 0.1216715149 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
17 Hb_011953_020 0.1222282695 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
18 Hb_004056_030 0.1229293553 - - hypothetical protein 33 [Hevea brasiliensis]
19 Hb_001507_040 0.1230959702 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002027_040 0.1243008202 - - synapse-associated protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000922_390 Hb_000922_390 Hb_011671_450 Hb_011671_450 Hb_000922_390--Hb_011671_450 Hb_001811_030 Hb_001811_030 Hb_000922_390--Hb_001811_030 Hb_093458_050 Hb_093458_050 Hb_000922_390--Hb_093458_050 Hb_009193_030 Hb_009193_030 Hb_000922_390--Hb_009193_030 Hb_002600_040 Hb_002600_040 Hb_000922_390--Hb_002600_040 Hb_000820_090 Hb_000820_090 Hb_000922_390--Hb_000820_090 Hb_005098_030 Hb_005098_030 Hb_011671_450--Hb_005098_030 Hb_011671_460 Hb_011671_460 Hb_011671_450--Hb_011671_460 Hb_011671_450--Hb_000820_090 Hb_004679_050 Hb_004679_050 Hb_011671_450--Hb_004679_050 Hb_011671_450--Hb_001811_030 Hb_001014_040 Hb_001014_040 Hb_001811_030--Hb_001014_040 Hb_004079_030 Hb_004079_030 Hb_001811_030--Hb_004079_030 Hb_001507_040 Hb_001507_040 Hb_001811_030--Hb_001507_040 Hb_000445_040 Hb_000445_040 Hb_001811_030--Hb_000445_040 Hb_008616_070 Hb_008616_070 Hb_001811_030--Hb_008616_070 Hb_011953_020 Hb_011953_020 Hb_093458_050--Hb_011953_020 Hb_003551_050 Hb_003551_050 Hb_093458_050--Hb_003551_050 Hb_093458_050--Hb_002600_040 Hb_001519_030 Hb_001519_030 Hb_093458_050--Hb_001519_030 Hb_002239_060 Hb_002239_060 Hb_093458_050--Hb_002239_060 Hb_019654_030 Hb_019654_030 Hb_009193_030--Hb_019654_030 Hb_000521_130 Hb_000521_130 Hb_009193_030--Hb_000521_130 Hb_002284_230 Hb_002284_230 Hb_009193_030--Hb_002284_230 Hb_001390_130 Hb_001390_130 Hb_009193_030--Hb_001390_130 Hb_009193_030--Hb_000820_090 Hb_012291_030 Hb_012291_030 Hb_002600_040--Hb_012291_030 Hb_002660_070 Hb_002660_070 Hb_002600_040--Hb_002660_070 Hb_002600_040--Hb_001519_030 Hb_002600_040--Hb_011953_020 Hb_000291_080 Hb_000291_080 Hb_000820_090--Hb_000291_080 Hb_005488_200 Hb_005488_200 Hb_000820_090--Hb_005488_200 Hb_008232_010 Hb_008232_010 Hb_000820_090--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000820_090--Hb_000982_080 Hb_002111_040 Hb_002111_040 Hb_000820_090--Hb_002111_040 Hb_004672_010 Hb_004672_010 Hb_000820_090--Hb_004672_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.40711 3.58312 5.14731 16.4684 9.92221 7.86414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7976 18.996 38.9947 19.5268 9.948

CAGE analysis