Hb_000922_420

Information

Type -
Description -
Location Contig922: 323157-323836
Sequence    

Annotation

kegg
ID rcu:RCOM_1510350
description glutaredoxin-1, grx1, putative
nr
ID XP_002511377.1
description glutaredoxin-1, grx1, putative [Ricinus communis]
swissprot
ID Q8L8T2
description Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2
trembl
ID B9RB02
description Glutaredoxin-1, grx1, putative OS=Ricinus communis GN=RCOM_1510350 PE=4 SV=1
Gene Ontology
ID GO:0005623
description glutaredoxin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_420 0.0 - - glutaredoxin-1, grx1, putative [Ricinus communis]
2 Hb_028071_010 0.1878667875 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_004342_020 0.2165134735 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
4 Hb_002450_040 0.2357657637 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
5 Hb_006831_100 0.2479840579 - - snRNA-activating protein complex subunit, putative [Ricinus communis]
6 Hb_003702_040 0.2545551385 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
7 Hb_000297_110 0.2580766593 - - PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
8 Hb_001377_030 0.2593188325 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
9 Hb_124393_010 0.2624405715 - - -
10 Hb_001195_040 0.2632886549 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
11 Hb_005511_170 0.2642521695 - - hypothetical protein CISIN_1g030718mg [Citrus sinensis]
12 Hb_006671_020 0.2643594247 - - hypothetical protein CISIN_1g0407181mg, partial [Citrus sinensis]
13 Hb_063805_010 0.2662956611 - - -
14 Hb_002783_120 0.2683203097 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
15 Hb_000521_140 0.2688999958 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
16 Hb_032844_020 0.2706521168 - - -
17 Hb_000836_430 0.2773930076 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
18 Hb_001373_110 0.2776153283 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
19 Hb_140833_010 0.2781976778 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
20 Hb_000424_020 0.279151749 - - Uncharacterized protein TCM_037386 [Theobroma cacao]

Gene co-expression network

sample Hb_000922_420 Hb_000922_420 Hb_028071_010 Hb_028071_010 Hb_000922_420--Hb_028071_010 Hb_004342_020 Hb_004342_020 Hb_000922_420--Hb_004342_020 Hb_002450_040 Hb_002450_040 Hb_000922_420--Hb_002450_040 Hb_006831_100 Hb_006831_100 Hb_000922_420--Hb_006831_100 Hb_003702_040 Hb_003702_040 Hb_000922_420--Hb_003702_040 Hb_000297_110 Hb_000297_110 Hb_000922_420--Hb_000297_110 Hb_006671_020 Hb_006671_020 Hb_028071_010--Hb_006671_020 Hb_028071_010--Hb_004342_020 Hb_002067_010 Hb_002067_010 Hb_028071_010--Hb_002067_010 Hb_000424_020 Hb_000424_020 Hb_028071_010--Hb_000424_020 Hb_013016_010 Hb_013016_010 Hb_028071_010--Hb_013016_010 Hb_019715_010 Hb_019715_010 Hb_004342_020--Hb_019715_010 Hb_001277_280 Hb_001277_280 Hb_004342_020--Hb_001277_280 Hb_001377_030 Hb_001377_030 Hb_004342_020--Hb_001377_030 Hb_004342_020--Hb_002450_040 Hb_011249_030 Hb_011249_030 Hb_004342_020--Hb_011249_030 Hb_026549_020 Hb_026549_020 Hb_004342_020--Hb_026549_020 Hb_002450_040--Hb_001377_030 Hb_000926_180 Hb_000926_180 Hb_002450_040--Hb_000926_180 Hb_007313_090 Hb_007313_090 Hb_002450_040--Hb_007313_090 Hb_001373_110 Hb_001373_110 Hb_002450_040--Hb_001373_110 Hb_002450_040--Hb_000297_110 Hb_000976_260 Hb_000976_260 Hb_002450_040--Hb_000976_260 Hb_001807_030 Hb_001807_030 Hb_006831_100--Hb_001807_030 Hb_005803_010 Hb_005803_010 Hb_006831_100--Hb_005803_010 Hb_007645_120 Hb_007645_120 Hb_006831_100--Hb_007645_120 Hb_007765_060 Hb_007765_060 Hb_006831_100--Hb_007765_060 Hb_001001_020 Hb_001001_020 Hb_006831_100--Hb_001001_020 Hb_001160_120 Hb_001160_120 Hb_006831_100--Hb_001160_120 Hb_000001_110 Hb_000001_110 Hb_003702_040--Hb_000001_110 Hb_000789_100 Hb_000789_100 Hb_003702_040--Hb_000789_100 Hb_000933_150 Hb_000933_150 Hb_003702_040--Hb_000933_150 Hb_000676_050 Hb_000676_050 Hb_003702_040--Hb_000676_050 Hb_000003_650 Hb_000003_650 Hb_003702_040--Hb_000003_650 Hb_006096_040 Hb_006096_040 Hb_003702_040--Hb_006096_040 Hb_000297_110--Hb_000676_050 Hb_010968_010 Hb_010968_010 Hb_000297_110--Hb_010968_010 Hb_002639_150 Hb_002639_150 Hb_000297_110--Hb_002639_150 Hb_000297_110--Hb_001160_120 Hb_001040_040 Hb_001040_040 Hb_000297_110--Hb_001040_040 Hb_000297_110--Hb_000789_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.468431 0.0828677 1.07442 0 0.530727 0.429062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.222712 0.174958 0.274854 0.0758941 0

CAGE analysis