Hb_000922_440

Information

Type -
Description -
Location Contig922: 330496-330867
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000922_440 0.0 - - -
2 Hb_184629_010 0.1755333053 - - UDP-Glycosyltransferase superfamily protein isoform 1 [Theobroma cacao]
3 Hb_000219_070 0.1871016473 - - -
4 Hb_059436_010 0.2284807596 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
5 Hb_040779_010 0.2349132528 - - -
6 Hb_000002_320 0.2690627623 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
7 Hb_034667_020 0.2843460566 - - conserved hypothetical protein [Ricinus communis]
8 Hb_028848_030 0.2931904143 - - -
9 Hb_063716_060 0.2987037178 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001023_020 0.3135405043 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
11 Hb_006960_030 0.3156524674 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
12 Hb_000270_860 0.3165548351 - - conserved hypothetical protein [Ricinus communis]
13 Hb_171554_020 0.3192978444 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
14 Hb_000028_630 0.3206221544 - - PIN-like protein, partial [Selaginella apoda]
15 Hb_001604_110 0.3356390887 - - -
16 Hb_020549_010 0.3370806608 - - PREDICTED: uncharacterized protein LOC105638664 isoform X2 [Jatropha curcas]
17 Hb_000007_310 0.3468907401 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
18 Hb_005539_320 0.3470551923 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
19 Hb_000200_060 0.3492340722 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
20 Hb_000214_090 0.3512154274 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]

Gene co-expression network

sample Hb_000922_440 Hb_000922_440 Hb_184629_010 Hb_184629_010 Hb_000922_440--Hb_184629_010 Hb_000219_070 Hb_000219_070 Hb_000922_440--Hb_000219_070 Hb_059436_010 Hb_059436_010 Hb_000922_440--Hb_059436_010 Hb_040779_010 Hb_040779_010 Hb_000922_440--Hb_040779_010 Hb_000002_320 Hb_000002_320 Hb_000922_440--Hb_000002_320 Hb_034667_020 Hb_034667_020 Hb_000922_440--Hb_034667_020 Hb_184629_010--Hb_040779_010 Hb_184629_010--Hb_059436_010 Hb_000200_060 Hb_000200_060 Hb_184629_010--Hb_000200_060 Hb_184629_010--Hb_000219_070 Hb_006960_030 Hb_006960_030 Hb_184629_010--Hb_006960_030 Hb_000493_020 Hb_000493_020 Hb_000219_070--Hb_000493_020 Hb_063716_060 Hb_063716_060 Hb_000219_070--Hb_063716_060 Hb_000219_070--Hb_040779_010 Hb_000219_070--Hb_006960_030 Hb_000028_630 Hb_000028_630 Hb_059436_010--Hb_000028_630 Hb_001178_120 Hb_001178_120 Hb_059436_010--Hb_001178_120 Hb_059436_010--Hb_040779_010 Hb_028848_030 Hb_028848_030 Hb_059436_010--Hb_028848_030 Hb_000214_090 Hb_000214_090 Hb_040779_010--Hb_000214_090 Hb_040779_010--Hb_000200_060 Hb_040779_010--Hb_028848_030 Hb_012107_070 Hb_012107_070 Hb_040779_010--Hb_012107_070 Hb_000002_320--Hb_063716_060 Hb_001023_020 Hb_001023_020 Hb_000002_320--Hb_001023_020 Hb_010222_010 Hb_010222_010 Hb_000002_320--Hb_010222_010 Hb_003556_020 Hb_003556_020 Hb_000002_320--Hb_003556_020 Hb_000188_090 Hb_000188_090 Hb_000002_320--Hb_000188_090 Hb_002463_080 Hb_002463_080 Hb_000002_320--Hb_002463_080 Hb_171619_010 Hb_171619_010 Hb_034667_020--Hb_171619_010 Hb_001277_410 Hb_001277_410 Hb_034667_020--Hb_001277_410 Hb_034667_020--Hb_001023_020 Hb_034667_020--Hb_040779_010 Hb_036693_010 Hb_036693_010 Hb_034667_020--Hb_036693_010 Hb_000160_150 Hb_000160_150 Hb_034667_020--Hb_000160_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.46833 0 3.06069 0 1.69802 5.05752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis