Hb_000923_010

Information

Type -
Description -
Location Contig923: 7936-27234
Sequence    

Annotation

kegg
ID cic:CICLE_v10019435mg
description hypothetical protein
nr
ID XP_012065045.1
description PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZVT9
description C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4
trembl
ID A0A067L732
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05708 PE=4 SV=1
Gene Ontology
ID GO:0009617
description c2 and gram domain-containing protein at1g03370 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62543: 8355-8589 , PASA_asmbl_62547: 21484-21580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000923_010 0.0 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
2 Hb_013399_020 0.055744908 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
3 Hb_000029_300 0.0591249798 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
4 Hb_000083_120 0.0612226797 - - transcription factor, putative [Ricinus communis]
5 Hb_002026_210 0.0624560616 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
6 Hb_000260_330 0.062527025 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
7 Hb_000340_530 0.0635260795 - - hypothetical protein VITISV_016664 [Vitis vinifera]
8 Hb_028512_020 0.0655708541 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
9 Hb_004195_200 0.0657554164 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
10 Hb_003750_050 0.0671321701 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
11 Hb_001635_090 0.0681489576 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
12 Hb_001408_040 0.0686869618 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
13 Hb_004324_130 0.0696161269 - - polypyrimidine tract binding protein, putative [Ricinus communis]
14 Hb_007576_110 0.0711837037 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
15 Hb_003683_020 0.0713680983 - - serine/threonine protein kinase, putative [Ricinus communis]
16 Hb_000025_180 0.0721512289 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
17 Hb_000696_230 0.0721916676 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
18 Hb_093458_040 0.072293952 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
19 Hb_001860_030 0.0723170265 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
20 Hb_020831_030 0.0723932169 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000923_010 Hb_000923_010 Hb_013399_020 Hb_013399_020 Hb_000923_010--Hb_013399_020 Hb_000029_300 Hb_000029_300 Hb_000923_010--Hb_000029_300 Hb_000083_120 Hb_000083_120 Hb_000923_010--Hb_000083_120 Hb_002026_210 Hb_002026_210 Hb_000923_010--Hb_002026_210 Hb_000260_330 Hb_000260_330 Hb_000923_010--Hb_000260_330 Hb_000340_530 Hb_000340_530 Hb_000923_010--Hb_000340_530 Hb_000170_090 Hb_000170_090 Hb_013399_020--Hb_000170_090 Hb_105328_020 Hb_105328_020 Hb_013399_020--Hb_105328_020 Hb_000441_220 Hb_000441_220 Hb_013399_020--Hb_000441_220 Hb_003683_020 Hb_003683_020 Hb_013399_020--Hb_003683_020 Hb_093458_040 Hb_093458_040 Hb_013399_020--Hb_093458_040 Hb_000060_090 Hb_000060_090 Hb_000029_300--Hb_000060_090 Hb_000213_010 Hb_000213_010 Hb_000029_300--Hb_000213_010 Hb_014361_070 Hb_014361_070 Hb_000029_300--Hb_014361_070 Hb_000029_300--Hb_000340_530 Hb_007576_110 Hb_007576_110 Hb_000029_300--Hb_007576_110 Hb_005765_010 Hb_005765_010 Hb_000083_120--Hb_005765_010 Hb_000111_290 Hb_000111_290 Hb_000083_120--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000083_120--Hb_011016_050 Hb_004324_130 Hb_004324_130 Hb_000083_120--Hb_004324_130 Hb_001500_140 Hb_001500_140 Hb_000083_120--Hb_001500_140 Hb_028512_020 Hb_028512_020 Hb_002026_210--Hb_028512_020 Hb_011849_040 Hb_011849_040 Hb_002026_210--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_002026_210--Hb_000009_500 Hb_000614_210 Hb_000614_210 Hb_002026_210--Hb_000614_210 Hb_002026_210--Hb_000340_530 Hb_000025_180 Hb_000025_180 Hb_000260_330--Hb_000025_180 Hb_000260_330--Hb_028512_020 Hb_000345_240 Hb_000345_240 Hb_000260_330--Hb_000345_240 Hb_002811_180 Hb_002811_180 Hb_000260_330--Hb_002811_180 Hb_000260_330--Hb_003683_020 Hb_002989_020 Hb_002989_020 Hb_000340_530--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_000340_530--Hb_011063_050 Hb_000340_530--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_000340_530--Hb_001679_050 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450 Hb_004109_080 Hb_004109_080 Hb_000340_530--Hb_004109_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.056 4.47422 3.60443 5.04696 4.75235 5.32328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52331 4.27611 4.12111 4.88106 3.02345

CAGE analysis