Hb_000923_020

Information

Type -
Description -
Location Contig923: 29344-31781
Sequence    

Annotation

kegg
ID rcu:RCOM_1238810
description ankyrin repeat-containing protein, putative
nr
ID XP_012065050.1
description PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
swissprot
ID G5E8K5
description Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1
trembl
ID A0A067L782
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05709 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62549: 29498-31774 , PASA_asmbl_62550: 30542-31077
cDNA
(Sanger)
(ID:Location)		 015_K14.ab1: 31197-31774

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000923_020 0.0 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
2 Hb_003777_330 0.0617229106 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
3 Hb_000099_240 0.0647684153 - - 60S ribosomal protein L7a, putative [Ricinus communis]
4 Hb_004223_090 0.0674858707 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
5 Hb_002375_020 0.0703380444 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
6 Hb_001377_290 0.0727371119 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
7 Hb_000621_080 0.0730293461 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004195_160 0.0743822332 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
9 Hb_002762_060 0.0753052795 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
10 Hb_000019_230 0.0754186009 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
11 Hb_001571_040 0.077213543 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
12 Hb_000300_060 0.0780835603 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
13 Hb_007590_010 0.0793469073 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000398_180 0.0794080066 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
15 Hb_000009_550 0.0795827125 - - hypothetical protein RCOM_0603640 [Ricinus communis]
16 Hb_010710_110 0.0800203491 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
17 Hb_000032_570 0.0803164838 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
18 Hb_000720_120 0.0807261425 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
19 Hb_181235_010 0.0808262694 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
20 Hb_001030_120 0.0816883759 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000923_020 Hb_000923_020 Hb_003777_330 Hb_003777_330 Hb_000923_020--Hb_003777_330 Hb_000099_240 Hb_000099_240 Hb_000923_020--Hb_000099_240 Hb_004223_090 Hb_004223_090 Hb_000923_020--Hb_004223_090 Hb_002375_020 Hb_002375_020 Hb_000923_020--Hb_002375_020 Hb_001377_290 Hb_001377_290 Hb_000923_020--Hb_001377_290 Hb_000621_080 Hb_000621_080 Hb_000923_020--Hb_000621_080 Hb_001720_050 Hb_001720_050 Hb_003777_330--Hb_001720_050 Hb_181235_010 Hb_181235_010 Hb_003777_330--Hb_181235_010 Hb_004195_160 Hb_004195_160 Hb_003777_330--Hb_004195_160 Hb_000224_170 Hb_000224_170 Hb_003777_330--Hb_000224_170 Hb_082609_020 Hb_082609_020 Hb_003777_330--Hb_082609_020 Hb_007590_010 Hb_007590_010 Hb_000099_240--Hb_007590_010 Hb_000099_240--Hb_004223_090 Hb_001358_030 Hb_001358_030 Hb_000099_240--Hb_001358_030 Hb_003777_270 Hb_003777_270 Hb_000099_240--Hb_003777_270 Hb_001677_210 Hb_001677_210 Hb_000099_240--Hb_001677_210 Hb_004223_090--Hb_003777_270 Hb_000057_200 Hb_000057_200 Hb_004223_090--Hb_000057_200 Hb_039946_020 Hb_039946_020 Hb_004223_090--Hb_039946_020 Hb_003159_080 Hb_003159_080 Hb_004223_090--Hb_003159_080 Hb_010381_070 Hb_010381_070 Hb_002375_020--Hb_010381_070 Hb_001301_160 Hb_001301_160 Hb_002375_020--Hb_001301_160 Hb_002027_260 Hb_002027_260 Hb_002375_020--Hb_002027_260 Hb_004109_200 Hb_004109_200 Hb_002375_020--Hb_004109_200 Hb_006332_020 Hb_006332_020 Hb_002375_020--Hb_006332_020 Hb_000398_180 Hb_000398_180 Hb_001377_290--Hb_000398_180 Hb_011689_080 Hb_011689_080 Hb_001377_290--Hb_011689_080 Hb_003392_040 Hb_003392_040 Hb_001377_290--Hb_003392_040 Hb_001138_050 Hb_001138_050 Hb_001377_290--Hb_001138_050 Hb_001377_290--Hb_004195_160 Hb_002078_150 Hb_002078_150 Hb_001377_290--Hb_002078_150 Hb_002495_070 Hb_002495_070 Hb_000621_080--Hb_002495_070 Hb_004722_060 Hb_004722_060 Hb_000621_080--Hb_004722_060 Hb_002150_080 Hb_002150_080 Hb_000621_080--Hb_002150_080 Hb_086639_070 Hb_086639_070 Hb_000621_080--Hb_086639_070 Hb_001610_110 Hb_001610_110 Hb_000621_080--Hb_001610_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.3762 47.2348 19.0257 23.9725 79.8155 92.27
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.0356 83.8127 56.3824 37.726 12.1825

CAGE analysis