Hb_000923_030

Information

Type -
Description -
Location Contig923: 49522-50754
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02891g
description POPTRDRAFT_558147; F-box family protein
nr
ID XP_002314220.1
description F-box family protein [Populus trichocarpa]
swissprot
ID Q8GX29
description F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1
trembl
ID B9HPR6
description F-box family protein OS=Populus trichocarpa GN=POPTR_0009s02891g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000923_030 0.0 - - F-box family protein [Populus trichocarpa]
2 Hb_001104_080 0.0399876409 - - peroxiredoxin, putative [Ricinus communis]
3 Hb_003090_050 0.0439091624 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
4 Hb_000825_010 0.0461998289 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
5 Hb_001287_070 0.050849998 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
6 Hb_000805_080 0.0509089575 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
7 Hb_008748_050 0.0517660015 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
8 Hb_032631_060 0.0526106395 - - Myosin heavy chain, putative [Ricinus communis]
9 Hb_000251_160 0.0531163154 - - chlorophyll A/B binding protein, putative [Ricinus communis]
10 Hb_086022_020 0.0550760502 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
11 Hb_011068_010 0.0563584565 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
12 Hb_000010_380 0.0574945231 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
13 Hb_001046_060 0.060505531 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
14 Hb_005605_020 0.0608228119 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
15 Hb_002818_130 0.0622796814 - - cytochrome P450, putative [Ricinus communis]
16 Hb_132840_050 0.065059322 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
17 Hb_004129_170 0.0657252639 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
18 Hb_001269_480 0.065973554 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
19 Hb_000111_460 0.0681538644 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
20 Hb_107748_010 0.0692990959 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000923_030 Hb_000923_030 Hb_001104_080 Hb_001104_080 Hb_000923_030--Hb_001104_080 Hb_003090_050 Hb_003090_050 Hb_000923_030--Hb_003090_050 Hb_000825_010 Hb_000825_010 Hb_000923_030--Hb_000825_010 Hb_001287_070 Hb_001287_070 Hb_000923_030--Hb_001287_070 Hb_000805_080 Hb_000805_080 Hb_000923_030--Hb_000805_080 Hb_008748_050 Hb_008748_050 Hb_000923_030--Hb_008748_050 Hb_001104_080--Hb_000825_010 Hb_032631_060 Hb_032631_060 Hb_001104_080--Hb_032631_060 Hb_001104_080--Hb_000805_080 Hb_007559_020 Hb_007559_020 Hb_001104_080--Hb_007559_020 Hb_000010_380 Hb_000010_380 Hb_001104_080--Hb_000010_380 Hb_000841_040 Hb_000841_040 Hb_003090_050--Hb_000841_040 Hb_000111_460 Hb_000111_460 Hb_003090_050--Hb_000111_460 Hb_003090_050--Hb_001287_070 Hb_003090_050--Hb_008748_050 Hb_003090_050--Hb_000010_380 Hb_000251_160 Hb_000251_160 Hb_000825_010--Hb_000251_160 Hb_000825_010--Hb_007559_020 Hb_132840_050 Hb_132840_050 Hb_000825_010--Hb_132840_050 Hb_005605_020 Hb_005605_020 Hb_000825_010--Hb_005605_020 Hb_011068_010 Hb_011068_010 Hb_001287_070--Hb_011068_010 Hb_001046_060 Hb_001046_060 Hb_001287_070--Hb_001046_060 Hb_005000_120 Hb_005000_120 Hb_001287_070--Hb_005000_120 Hb_001287_070--Hb_000805_080 Hb_001287_070--Hb_000010_380 Hb_000805_080--Hb_000010_380 Hb_000805_080--Hb_001046_060 Hb_003337_080 Hb_003337_080 Hb_000805_080--Hb_003337_080 Hb_000805_080--Hb_011068_010 Hb_000805_080--Hb_005605_020 Hb_086022_020 Hb_086022_020 Hb_008748_050--Hb_086022_020 Hb_176135_010 Hb_176135_010 Hb_008748_050--Hb_176135_010 Hb_008748_050--Hb_000111_460 Hb_000012_370 Hb_000012_370 Hb_008748_050--Hb_000012_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.163096 6.07342 1.88663 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0308973 0 0.024742 18.3792

CAGE analysis