Hb_000923_050

Information

Type -
Description -
Location Contig923: 82761-87361
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12530g
description POPTRDRAFT_780752; ethylene-responsive family protein
nr
ID XP_012065056.1
description PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
swissprot
ID Q9M0X8
description Transcription factor bHLH114 OS=Arabidopsis thaliana GN=BHLH114 PE=2 SV=2
trembl
ID A0A067LI45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05712 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh113 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62554: 82804-84496 , PASA_asmbl_62555: 85524-87560 , PASA_asmbl_62556: 87300-87579
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000923_050 0.0 - - PREDICTED: transcription factor bHLH113 isoform X1 [Jatropha curcas]
2 Hb_011828_020 0.0973647769 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
3 Hb_000329_650 0.0975014453 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
4 Hb_000395_080 0.1130056282 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
5 Hb_007441_230 0.1170164921 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
6 Hb_000696_340 0.119428938 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
7 Hb_002333_080 0.119440739 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20-like [Populus euphratica]
8 Hb_011689_040 0.1262531079 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
9 Hb_000220_220 0.1270581732 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
10 Hb_001477_130 0.1282924113 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
11 Hb_001439_100 0.1289104689 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
12 Hb_001472_120 0.1304393774 - - -
13 Hb_005329_020 0.1314289404 - - PREDICTED: U-box domain-containing protein 8 [Jatropha curcas]
14 Hb_002137_020 0.1319881581 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_005736_060 0.1324051761 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
16 Hb_000329_630 0.132968257 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
17 Hb_154826_010 0.1335094331 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_003683_040 0.1343149676 - - unnamed protein product [Coffea canephora]
19 Hb_002061_040 0.1345987785 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
20 Hb_005054_290 0.1346267142 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]

Gene co-expression network

sample Hb_000923_050 Hb_000923_050 Hb_011828_020 Hb_011828_020 Hb_000923_050--Hb_011828_020 Hb_000329_650 Hb_000329_650 Hb_000923_050--Hb_000329_650 Hb_000395_080 Hb_000395_080 Hb_000923_050--Hb_000395_080 Hb_007441_230 Hb_007441_230 Hb_000923_050--Hb_007441_230 Hb_000696_340 Hb_000696_340 Hb_000923_050--Hb_000696_340 Hb_002333_080 Hb_002333_080 Hb_000923_050--Hb_002333_080 Hb_011828_020--Hb_000395_080 Hb_000877_060 Hb_000877_060 Hb_011828_020--Hb_000877_060 Hb_001477_130 Hb_001477_130 Hb_011828_020--Hb_001477_130 Hb_003020_230 Hb_003020_230 Hb_011828_020--Hb_003020_230 Hb_000613_140 Hb_000613_140 Hb_011828_020--Hb_000613_140 Hb_000329_630 Hb_000329_630 Hb_000329_650--Hb_000329_630 Hb_000329_650--Hb_000696_340 Hb_005329_020 Hb_005329_020 Hb_000329_650--Hb_005329_020 Hb_005056_060 Hb_005056_060 Hb_000329_650--Hb_005056_060 Hb_000329_650--Hb_002333_080 Hb_000395_080--Hb_000877_060 Hb_000395_080--Hb_001477_130 Hb_000395_080--Hb_000696_340 Hb_002137_020 Hb_002137_020 Hb_000395_080--Hb_002137_020 Hb_005215_030 Hb_005215_030 Hb_000395_080--Hb_005215_030 Hb_007441_230--Hb_002137_020 Hb_000805_020 Hb_000805_020 Hb_007441_230--Hb_000805_020 Hb_004223_280 Hb_004223_280 Hb_007441_230--Hb_004223_280 Hb_005305_080 Hb_005305_080 Hb_007441_230--Hb_005305_080 Hb_007441_200 Hb_007441_200 Hb_007441_230--Hb_007441_200 Hb_000571_120 Hb_000571_120 Hb_007441_230--Hb_000571_120 Hb_000221_210 Hb_000221_210 Hb_000696_340--Hb_000221_210 Hb_000696_340--Hb_002137_020 Hb_000696_340--Hb_005329_020 Hb_000696_340--Hb_000329_630 Hb_000696_340--Hb_004223_280 Hb_012022_030 Hb_012022_030 Hb_000696_340--Hb_012022_030 Hb_000500_090 Hb_000500_090 Hb_002333_080--Hb_000500_090 Hb_004970_110 Hb_004970_110 Hb_002333_080--Hb_004970_110 Hb_003120_030 Hb_003120_030 Hb_002333_080--Hb_003120_030 Hb_001329_220 Hb_001329_220 Hb_002333_080--Hb_001329_220 Hb_007317_180 Hb_007317_180 Hb_002333_080--Hb_007317_180 Hb_002333_080--Hb_011828_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9067 14.3145 2.16183 7.77308 12.3457 17.612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.8154 24.2268 12.614 23.2468 5.31001

CAGE analysis