Hb_000923_070

Information

Type -
Description -
Location Contig923: 112718-113681
Sequence    

Annotation

kegg
ID rcu:RCOM_0548540
description hypothetical protein
nr
ID XP_002530588.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5R8X3
description Transmembrane protein 230 OS=Pongo abelii GN=TMEM230 PE=2 SV=1
trembl
ID B9SX69
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0548540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62563: 112767-113500
cDNA
(Sanger)
(ID:Location)		 011_P22.ab1: 112773-113500 , 036_L06.ab1: 112768-113500 , 048_L13.ab1: 112773-113475

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000923_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000836_070 0.0751684938 - - protein binding protein, putative [Ricinus communis]
3 Hb_000376_050 0.080953445 - - polyadenylate-binding protein, putative [Ricinus communis]
4 Hb_002307_030 0.086729548 - - 40S ribosomal protein S15D [Hevea brasiliensis]
5 Hb_001243_050 0.0877146866 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
6 Hb_000956_010 0.0918812305 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
7 Hb_003216_100 0.0963181425 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
8 Hb_001587_020 0.0968917927 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
9 Hb_005488_010 0.0970857301 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008453_090 0.0975256071 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
11 Hb_004899_320 0.0987601316 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
12 Hb_000983_100 0.0992077781 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
13 Hb_000156_100 0.101692196 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
14 Hb_001427_120 0.1019104514 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
15 Hb_002603_100 0.1021226958 - - ATATH9, putative [Ricinus communis]
16 Hb_000091_090 0.1023758907 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
17 Hb_000883_050 0.1030219248 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
18 Hb_001718_100 0.1034265123 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
19 Hb_021650_030 0.1052668774 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
20 Hb_016065_010 0.1053243695 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]

Gene co-expression network

sample Hb_000923_070 Hb_000923_070 Hb_000836_070 Hb_000836_070 Hb_000923_070--Hb_000836_070 Hb_000376_050 Hb_000376_050 Hb_000923_070--Hb_000376_050 Hb_002307_030 Hb_002307_030 Hb_000923_070--Hb_002307_030 Hb_001243_050 Hb_001243_050 Hb_000923_070--Hb_001243_050 Hb_000956_010 Hb_000956_010 Hb_000923_070--Hb_000956_010 Hb_003216_100 Hb_003216_100 Hb_000923_070--Hb_003216_100 Hb_005488_010 Hb_005488_010 Hb_000836_070--Hb_005488_010 Hb_004899_320 Hb_004899_320 Hb_000836_070--Hb_004899_320 Hb_008453_090 Hb_008453_090 Hb_000836_070--Hb_008453_090 Hb_010710_040 Hb_010710_040 Hb_000836_070--Hb_010710_040 Hb_003018_190 Hb_003018_190 Hb_000836_070--Hb_003018_190 Hb_000376_050--Hb_000956_010 Hb_002603_100 Hb_002603_100 Hb_000376_050--Hb_002603_100 Hb_004662_030 Hb_004662_030 Hb_000376_050--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050 Hb_002307_030--Hb_001243_050 Hb_002374_490 Hb_002374_490 Hb_002307_030--Hb_002374_490 Hb_000156_130 Hb_000156_130 Hb_002307_030--Hb_000156_130 Hb_023732_070 Hb_023732_070 Hb_002307_030--Hb_023732_070 Hb_002311_350 Hb_002311_350 Hb_002307_030--Hb_002311_350 Hb_000977_080 Hb_000977_080 Hb_002307_030--Hb_000977_080 Hb_001243_050--Hb_002603_100 Hb_006447_010 Hb_006447_010 Hb_001243_050--Hb_006447_010 Hb_001671_020 Hb_001671_020 Hb_001243_050--Hb_001671_020 Hb_022250_040 Hb_022250_040 Hb_001243_050--Hb_022250_040 Hb_000956_010--Hb_001427_120 Hb_006693_030 Hb_006693_030 Hb_000956_010--Hb_006693_030 Hb_000956_010--Hb_002603_100 Hb_000956_010--Hb_022250_040 Hb_023386_080 Hb_023386_080 Hb_000956_010--Hb_023386_080 Hb_000883_050 Hb_000883_050 Hb_003216_100--Hb_000883_050 Hb_001248_080 Hb_001248_080 Hb_003216_100--Hb_001248_080 Hb_005333_130 Hb_005333_130 Hb_003216_100--Hb_005333_130 Hb_000531_020 Hb_000531_020 Hb_003216_100--Hb_000531_020 Hb_007101_150 Hb_007101_150 Hb_003216_100--Hb_007101_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
121.534 74.0109 20.3926 40.0145 149.172 212.701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
199.986 289.124 239.718 43.3038 20.6903

CAGE analysis