Hb_000923_080

Information

Type -
Description -
Location Contig923: 116834-123961
Sequence    

Annotation

kegg
ID rcu:RCOM_0547730
description Eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_012065068.1
description PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
swissprot
ID O74965
description Eukaryotic translation initiation factor 2A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4B4.04 PE=1 SV=1
trembl
ID B9SX58
description Eukaryotic translation initiation factor 3 subunit, putative OS=Ricinus communis GN=RCOM_0547730 PE=4 SV=1
Gene Ontology
ID GO:0005886
description eukaryotic translation initiation factor 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62564: 117251-123973 , PASA_asmbl_62565: 116940-123614 , PASA_asmbl_62566: 118175-121118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000923_080 0.0 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
2 Hb_004235_080 0.0439752847 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
3 Hb_010053_030 0.0554236329 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
4 Hb_000648_100 0.060861215 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
5 Hb_004209_020 0.0644012773 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
6 Hb_008159_020 0.0672288998 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
7 Hb_104061_020 0.0698992091 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
8 Hb_001235_140 0.0714118975 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
9 Hb_000470_070 0.071659633 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
10 Hb_000390_320 0.0720226892 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
11 Hb_003097_170 0.0720466957 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
12 Hb_032278_020 0.0723998822 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
13 Hb_001935_110 0.0740897032 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
14 Hb_174821_010 0.0750542975 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
15 Hb_000089_120 0.0768353692 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_002375_010 0.0768516928 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
17 Hb_004429_100 0.0773035622 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
18 Hb_011930_080 0.0776442863 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
19 Hb_002078_100 0.0785342173 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
20 Hb_019654_040 0.0790822561 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000923_080 Hb_000923_080 Hb_004235_080 Hb_004235_080 Hb_000923_080--Hb_004235_080 Hb_010053_030 Hb_010053_030 Hb_000923_080--Hb_010053_030 Hb_000648_100 Hb_000648_100 Hb_000923_080--Hb_000648_100 Hb_004209_020 Hb_004209_020 Hb_000923_080--Hb_004209_020 Hb_008159_020 Hb_008159_020 Hb_000923_080--Hb_008159_020 Hb_104061_020 Hb_104061_020 Hb_000923_080--Hb_104061_020 Hb_004235_080--Hb_008159_020 Hb_002375_010 Hb_002375_010 Hb_004235_080--Hb_002375_010 Hb_004235_080--Hb_004209_020 Hb_003097_170 Hb_003097_170 Hb_004235_080--Hb_003097_170 Hb_004235_080--Hb_104061_020 Hb_000505_020 Hb_000505_020 Hb_010053_030--Hb_000505_020 Hb_010053_030--Hb_104061_020 Hb_001235_140 Hb_001235_140 Hb_010053_030--Hb_001235_140 Hb_010053_030--Hb_000648_100 Hb_004096_070 Hb_004096_070 Hb_010053_030--Hb_004096_070 Hb_000470_070 Hb_000470_070 Hb_000648_100--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_000648_100--Hb_002078_100 Hb_001454_320 Hb_001454_320 Hb_000648_100--Hb_001454_320 Hb_019654_040 Hb_019654_040 Hb_000648_100--Hb_019654_040 Hb_001140_350 Hb_001140_350 Hb_000648_100--Hb_001140_350 Hb_002835_230 Hb_002835_230 Hb_004209_020--Hb_002835_230 Hb_131646_010 Hb_131646_010 Hb_004209_020--Hb_131646_010 Hb_004785_100 Hb_004785_100 Hb_004209_020--Hb_004785_100 Hb_004209_020--Hb_002375_010 Hb_000179_030 Hb_000179_030 Hb_008159_020--Hb_000179_030 Hb_000768_110 Hb_000768_110 Hb_008159_020--Hb_000768_110 Hb_006252_040 Hb_006252_040 Hb_008159_020--Hb_006252_040 Hb_002823_030 Hb_002823_030 Hb_008159_020--Hb_002823_030 Hb_005914_060 Hb_005914_060 Hb_008159_020--Hb_005914_060 Hb_002107_070 Hb_002107_070 Hb_104061_020--Hb_002107_070 Hb_000579_230 Hb_000579_230 Hb_104061_020--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_104061_020--Hb_002329_040 Hb_000740_100 Hb_000740_100 Hb_104061_020--Hb_000740_100 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.097 17.5727 14.951 12.3354 25.7476 27.2523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.113 11.0977 10.7245 23.0487 9.47921

CAGE analysis