Hb_000925_030

Information

Type -
Description -
Location Contig925: 7316-17207
Sequence    

Annotation

kegg
ID rcu:RCOM_0419820
description ATP-dependent RNA helicase, putative
nr
ID XP_002524066.1
description ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q8VHK9
description ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=1 SV=2
trembl
ID B9SDJ7
description ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0419820 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dhx36 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62580: 7569-17181 , PASA_asmbl_62581: 15769-15973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000925_030 0.0 - - ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_003147_060 0.0866491421 - - syntaxin, plant, putative [Ricinus communis]
3 Hb_003925_040 0.1043479199 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
4 Hb_004108_240 0.1050535837 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
5 Hb_124677_040 0.1071146637 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
6 Hb_002107_060 0.1124238564 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
7 Hb_001638_030 0.112680263 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
8 Hb_001245_050 0.1127431089 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
9 Hb_000421_230 0.1138886202 - - retinal degeneration B beta, putative [Ricinus communis]
10 Hb_000638_280 0.1150504011 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
11 Hb_000011_050 0.117031036 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
12 Hb_000045_260 0.1197720845 - - protein with unknown function [Ricinus communis]
13 Hb_006452_180 0.1204526892 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
14 Hb_000002_240 0.1208077849 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
15 Hb_000186_200 0.1232735047 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
16 Hb_001376_010 0.1247046015 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
17 Hb_002311_140 0.1254861806 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
18 Hb_003777_110 0.1260354442 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
19 Hb_002897_050 0.1283570269 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
20 Hb_000375_290 0.1291168873 - - DAG protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000925_030 Hb_000925_030 Hb_003147_060 Hb_003147_060 Hb_000925_030--Hb_003147_060 Hb_003925_040 Hb_003925_040 Hb_000925_030--Hb_003925_040 Hb_004108_240 Hb_004108_240 Hb_000925_030--Hb_004108_240 Hb_124677_040 Hb_124677_040 Hb_000925_030--Hb_124677_040 Hb_002107_060 Hb_002107_060 Hb_000925_030--Hb_002107_060 Hb_001638_030 Hb_001638_030 Hb_000925_030--Hb_001638_030 Hb_003147_060--Hb_003925_040 Hb_002869_050 Hb_002869_050 Hb_003147_060--Hb_002869_050 Hb_006452_180 Hb_006452_180 Hb_003147_060--Hb_006452_180 Hb_003147_060--Hb_004108_240 Hb_009545_090 Hb_009545_090 Hb_003147_060--Hb_009545_090 Hb_004774_020 Hb_004774_020 Hb_003925_040--Hb_004774_020 Hb_084490_010 Hb_084490_010 Hb_003925_040--Hb_084490_010 Hb_003925_040--Hb_009545_090 Hb_003925_040--Hb_004108_240 Hb_002042_170 Hb_002042_170 Hb_003925_040--Hb_002042_170 Hb_004108_240--Hb_124677_040 Hb_000045_260 Hb_000045_260 Hb_004108_240--Hb_000045_260 Hb_001376_010 Hb_001376_010 Hb_004108_240--Hb_001376_010 Hb_004108_240--Hb_004774_020 Hb_003581_280 Hb_003581_280 Hb_124677_040--Hb_003581_280 Hb_002900_120 Hb_002900_120 Hb_124677_040--Hb_002900_120 Hb_124677_040--Hb_004774_020 Hb_124677_040--Hb_003925_040 Hb_002897_050 Hb_002897_050 Hb_002107_060--Hb_002897_050 Hb_011631_010 Hb_011631_010 Hb_002107_060--Hb_011631_010 Hb_000084_240 Hb_000084_240 Hb_002107_060--Hb_000084_240 Hb_002107_060--Hb_000045_260 Hb_000638_280 Hb_000638_280 Hb_002107_060--Hb_000638_280 Hb_000375_290 Hb_000375_290 Hb_002107_060--Hb_000375_290 Hb_001235_170 Hb_001235_170 Hb_001638_030--Hb_001235_170 Hb_002685_200 Hb_002685_200 Hb_001638_030--Hb_002685_200 Hb_006538_130 Hb_006538_130 Hb_001638_030--Hb_006538_130 Hb_001638_030--Hb_001376_010 Hb_001638_030--Hb_003147_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7618 81.068 57.1817 34.8196 17.3119 16.5603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2531 32.8007 11.0053 15.8466 12.7718

CAGE analysis