Hb_000925_110

Information

Type -
Description -
Location Contig925: 95297-96541
Sequence    

Annotation

kegg
ID rcu:RCOM_0419140
description Spotted leaf protein, putative
nr
ID XP_002524056.1
description Spotted leaf protein, putative [Ricinus communis]
swissprot
ID Q84TG3
description E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1
trembl
ID B9SDI7
description Spotted leaf protein, putative OS=Ricinus communis GN=RCOM_0419110 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase pub23-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000925_110 0.0 - - Spotted leaf protein, putative [Ricinus communis]
2 Hb_002066_050 0.0789049783 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
3 Hb_000656_350 0.085926537 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
4 Hb_004724_310 0.0885338145 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
5 Hb_000714_080 0.0895935857 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
6 Hb_096930_010 0.1017565226 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
7 Hb_000665_090 0.1037443266 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000808_090 0.1056289999 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
9 Hb_019978_010 0.1151505157 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
10 Hb_000731_020 0.1176020484 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
11 Hb_124953_010 0.1195121534 - - hypothetical protein RCOM_1314600 [Ricinus communis]
12 Hb_001677_140 0.1202882441 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
13 Hb_001198_170 0.12093942 - - -
14 Hb_010136_020 0.1214990095 - - stress-induced receptor-like kinase [Medicago truncatula]
15 Hb_002006_110 0.1218330629 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
16 Hb_001511_200 0.1220507393 - - Embryonic abundant protein, putative [Ricinus communis]
17 Hb_006916_220 0.1228379442 - - hypothetical protein JCGZ_20099 [Jatropha curcas]
18 Hb_032260_100 0.1249751034 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
19 Hb_000127_200 0.1255861748 - - PREDICTED: uncharacterized protein LOC100255537 [Vitis vinifera]
20 Hb_128851_020 0.1263747603 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000925_110 Hb_000925_110 Hb_002066_050 Hb_002066_050 Hb_000925_110--Hb_002066_050 Hb_000656_350 Hb_000656_350 Hb_000925_110--Hb_000656_350 Hb_004724_310 Hb_004724_310 Hb_000925_110--Hb_004724_310 Hb_000714_080 Hb_000714_080 Hb_000925_110--Hb_000714_080 Hb_096930_010 Hb_096930_010 Hb_000925_110--Hb_096930_010 Hb_000665_090 Hb_000665_090 Hb_000925_110--Hb_000665_090 Hb_002066_050--Hb_000665_090 Hb_002066_050--Hb_000714_080 Hb_007546_010 Hb_007546_010 Hb_002066_050--Hb_007546_010 Hb_000627_130 Hb_000627_130 Hb_002066_050--Hb_000627_130 Hb_000904_110 Hb_000904_110 Hb_002066_050--Hb_000904_110 Hb_032260_100 Hb_032260_100 Hb_000656_350--Hb_032260_100 Hb_029622_080 Hb_029622_080 Hb_000656_350--Hb_029622_080 Hb_000571_030 Hb_000571_030 Hb_000656_350--Hb_000571_030 Hb_000032_150 Hb_000032_150 Hb_000656_350--Hb_000032_150 Hb_000808_090 Hb_000808_090 Hb_000656_350--Hb_000808_090 Hb_006916_220 Hb_006916_220 Hb_004724_310--Hb_006916_220 Hb_000996_100 Hb_000996_100 Hb_004724_310--Hb_000996_100 Hb_008963_010 Hb_008963_010 Hb_004724_310--Hb_008963_010 Hb_000731_020 Hb_000731_020 Hb_004724_310--Hb_000731_020 Hb_004724_310--Hb_000714_080 Hb_000714_080--Hb_000665_090 Hb_000714_080--Hb_008963_010 Hb_000714_080--Hb_000904_110 Hb_096930_010--Hb_000656_350 Hb_096930_010--Hb_004724_310 Hb_096930_010--Hb_032260_100 Hb_001310_080 Hb_001310_080 Hb_096930_010--Hb_001310_080 Hb_000836_220 Hb_000836_220 Hb_096930_010--Hb_000836_220 Hb_000665_090--Hb_000808_090 Hb_101058_020 Hb_101058_020 Hb_000665_090--Hb_101058_020 Hb_000665_090--Hb_000904_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 54.0456 26.8163 24.9852 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.391274 2.47022

CAGE analysis