Hb_000925_130

Information

Type transcription factor
Description TF Family: TRAF
Location Contig925: 113301-117030
Sequence    

Annotation

kegg
ID pop:POPTR_0006s21940g
description POPTRDRAFT_561152; hypothetical protein
nr
ID XP_012074312.1
description PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
swissprot
ID Q8RX01
description BTB/POZ domain-containing protein At3g05675 OS=Arabidopsis thaliana GN=At3g05675 PE=2 SV=1
trembl
ID A0A067KJ03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08756 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62592: 113332-115917 , PASA_asmbl_62593: 113701-114127 , PASA_asmbl_62595: 116200-117021 , PASA_asmbl_62596: 116200-118272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000925_130 0.0 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
2 Hb_000288_030 0.0656922124 - - PREDICTED: syntaxin-32 [Jatropha curcas]
3 Hb_013358_040 0.0712668997 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
4 Hb_000928_070 0.0716026006 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
5 Hb_000349_260 0.0727480625 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
6 Hb_000345_310 0.073929909 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]
7 Hb_000375_350 0.0759249056 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
8 Hb_001912_110 0.0767215574 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_002754_010 0.0772569855 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
10 Hb_010931_130 0.0779451768 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
11 Hb_004078_040 0.078575357 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
12 Hb_000393_020 0.0791498494 - - lipid binding protein, putative [Ricinus communis]
13 Hb_001300_150 0.0797435857 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
14 Hb_065525_040 0.0812834853 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
15 Hb_004109_220 0.0839043484 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
16 Hb_138585_090 0.0840402916 - - Long chain base2 isoform 2 [Theobroma cacao]
17 Hb_004162_130 0.0847863906 - - conserved hypothetical protein [Ricinus communis]
18 Hb_013575_010 0.0848724571 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
19 Hb_000260_350 0.085923979 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000260_030 0.0860438437 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]

Gene co-expression network

sample Hb_000925_130 Hb_000925_130 Hb_000288_030 Hb_000288_030 Hb_000925_130--Hb_000288_030 Hb_013358_040 Hb_013358_040 Hb_000925_130--Hb_013358_040 Hb_000928_070 Hb_000928_070 Hb_000925_130--Hb_000928_070 Hb_000349_260 Hb_000349_260 Hb_000925_130--Hb_000349_260 Hb_000345_310 Hb_000345_310 Hb_000925_130--Hb_000345_310 Hb_000375_350 Hb_000375_350 Hb_000925_130--Hb_000375_350 Hb_000288_030--Hb_000928_070 Hb_004109_220 Hb_004109_220 Hb_000288_030--Hb_004109_220 Hb_000003_230 Hb_000003_230 Hb_000288_030--Hb_000003_230 Hb_003582_060 Hb_003582_060 Hb_000288_030--Hb_003582_060 Hb_012022_040 Hb_012022_040 Hb_000288_030--Hb_012022_040 Hb_000069_310 Hb_000069_310 Hb_013358_040--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_013358_040--Hb_000915_180 Hb_164010_040 Hb_164010_040 Hb_013358_040--Hb_164010_040 Hb_002073_200 Hb_002073_200 Hb_013358_040--Hb_002073_200 Hb_003428_010 Hb_003428_010 Hb_013358_040--Hb_003428_010 Hb_000869_080 Hb_000869_080 Hb_013358_040--Hb_000869_080 Hb_001541_120 Hb_001541_120 Hb_000928_070--Hb_001541_120 Hb_000856_010 Hb_000856_010 Hb_000928_070--Hb_000856_010 Hb_000928_070--Hb_012022_040 Hb_000928_070--Hb_003582_060 Hb_000140_090 Hb_000140_090 Hb_000928_070--Hb_000140_090 Hb_000260_350 Hb_000260_350 Hb_000349_260--Hb_000260_350 Hb_000637_110 Hb_000637_110 Hb_000349_260--Hb_000637_110 Hb_000088_170 Hb_000088_170 Hb_000349_260--Hb_000088_170 Hb_001511_060 Hb_001511_060 Hb_000349_260--Hb_001511_060 Hb_000392_420 Hb_000392_420 Hb_000349_260--Hb_000392_420 Hb_001473_160 Hb_001473_160 Hb_000349_260--Hb_001473_160 Hb_000345_310--Hb_000375_350 Hb_013575_010 Hb_013575_010 Hb_000345_310--Hb_013575_010 Hb_000345_310--Hb_000260_350 Hb_000599_250 Hb_000599_250 Hb_000345_310--Hb_000599_250 Hb_001300_150 Hb_001300_150 Hb_000345_310--Hb_001300_150 Hb_017895_040 Hb_017895_040 Hb_000375_350--Hb_017895_040 Hb_000375_350--Hb_001300_150 Hb_000375_350--Hb_000599_250 Hb_005496_140 Hb_005496_140 Hb_000375_350--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000375_350--Hb_002641_060 Hb_000375_350--Hb_013575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.20027 4.54817 5.37992 6.61108 4.27736 3.49664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.52122 6.07782 7.98962 3.085 5.64884

CAGE analysis