Hb_000926_040

Information

Type -
Description -
Location Contig926: 53492-66526
Sequence    

Annotation

kegg
ID vvi:100252044
description DNA mismatch repair protein MSH5
nr
ID XP_012070855.1
description PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
swissprot
ID F4JEP5
description DNA mismatch repair protein MSH5 OS=Arabidopsis thaliana GN=MSH5 PE=2 SV=1
trembl
ID D7T7Z8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00670 PE=3 SV=1
Gene Ontology
ID GO:0005524
description dna mismatch repair protein msh5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62646: 55010-57578 , PASA_asmbl_62647: 59961-60190 , PASA_asmbl_62648: 61228-62491 , PASA_asmbl_62649: 65332-67085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_040 0.0 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
2 Hb_010868_040 0.1012603177 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
3 Hb_006816_250 0.1087734759 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
4 Hb_000243_060 0.1146732475 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
5 Hb_010381_040 0.1178331645 - - beta-galactosidase, putative [Ricinus communis]
6 Hb_004855_020 0.1241365852 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
7 Hb_004102_080 0.1289725362 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
8 Hb_000207_350 0.1315994368 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
9 Hb_005839_090 0.1347374729 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g56230 isoform X1 [Populus euphratica]
10 Hb_002085_090 0.135278546 - - -
11 Hb_000227_400 0.1416392129 - - lipoxygenase, putative [Ricinus communis]
12 Hb_000922_160 0.142546022 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
13 Hb_000416_190 0.1444449533 - - -
14 Hb_003915_020 0.1448661785 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
15 Hb_021346_050 0.1464247061 - - xylulose kinase, putative [Ricinus communis]
16 Hb_000009_420 0.1478368505 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
17 Hb_000940_030 0.1482221624 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
18 Hb_002078_390 0.1486805825 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
19 Hb_003398_040 0.1541434702 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
20 Hb_002701_070 0.1545386262 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]

Gene co-expression network

sample Hb_000926_040 Hb_000926_040 Hb_010868_040 Hb_010868_040 Hb_000926_040--Hb_010868_040 Hb_006816_250 Hb_006816_250 Hb_000926_040--Hb_006816_250 Hb_000243_060 Hb_000243_060 Hb_000926_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_000926_040--Hb_010381_040 Hb_004855_020 Hb_004855_020 Hb_000926_040--Hb_004855_020 Hb_004102_080 Hb_004102_080 Hb_000926_040--Hb_004102_080 Hb_010868_040--Hb_004855_020 Hb_000227_400 Hb_000227_400 Hb_010868_040--Hb_000227_400 Hb_000940_030 Hb_000940_030 Hb_010868_040--Hb_000940_030 Hb_000207_350 Hb_000207_350 Hb_010868_040--Hb_000207_350 Hb_010868_040--Hb_000243_060 Hb_010868_040--Hb_010381_040 Hb_000645_260 Hb_000645_260 Hb_006816_250--Hb_000645_260 Hb_000283_030 Hb_000283_030 Hb_006816_250--Hb_000283_030 Hb_001377_120 Hb_001377_120 Hb_006816_250--Hb_001377_120 Hb_005725_240 Hb_005725_240 Hb_006816_250--Hb_005725_240 Hb_006816_250--Hb_000243_060 Hb_000181_330 Hb_000181_330 Hb_000243_060--Hb_000181_330 Hb_002078_390 Hb_002078_390 Hb_000243_060--Hb_002078_390 Hb_000243_060--Hb_000227_400 Hb_000243_060--Hb_010381_040 Hb_010381_040--Hb_000207_350 Hb_010381_040--Hb_004855_020 Hb_001123_310 Hb_001123_310 Hb_010381_040--Hb_001123_310 Hb_002701_070 Hb_002701_070 Hb_010381_040--Hb_002701_070 Hb_004855_020--Hb_000207_350 Hb_004855_020--Hb_000227_400 Hb_001104_150 Hb_001104_150 Hb_004855_020--Hb_001104_150 Hb_004855_020--Hb_001123_310 Hb_003915_020 Hb_003915_020 Hb_004102_080--Hb_003915_020 Hb_000175_200 Hb_000175_200 Hb_004102_080--Hb_000175_200 Hb_121089_010 Hb_121089_010 Hb_004102_080--Hb_121089_010 Hb_021346_050 Hb_021346_050 Hb_004102_080--Hb_021346_050 Hb_004102_080--Hb_010868_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.028564 0.228942 1.33344 0.711142 0 0.0448231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0932411 0.088043 0 0.279801 0.84118

CAGE analysis