Hb_000926_060

Information

Type -
Description -
Location Contig926: 80301-88797
Sequence    

Annotation

kegg
ID rcu:RCOM_1303140
description hypothetical protein
nr
ID XP_002529914.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q15042
description Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens GN=RAB3GAP1 PE=1 SV=3
trembl
ID B9SV95
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1303140 PE=4 SV=1
Gene Ontology
ID GO:0005096
description rab3 gtpase-activating protein catalytic subunit-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62650: 80471-81593 , PASA_asmbl_62651: 81818-81961 , PASA_asmbl_62652: 82125-87199 , PASA_asmbl_62654: 87201-88675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000579_080 0.0596758171 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
3 Hb_070624_010 0.0639389755 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
4 Hb_003680_220 0.0679754144 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
5 Hb_000500_220 0.0797158524 - - PREDICTED: intersectin-1 [Jatropha curcas]
6 Hb_008725_270 0.0803207862 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
7 Hb_000358_210 0.0830632531 - - oligosaccharyl transferase, putative [Ricinus communis]
8 Hb_000029_400 0.0841076563 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
9 Hb_011716_010 0.0848972349 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
10 Hb_007483_070 0.0850661348 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
11 Hb_001504_010 0.0862748215 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
12 Hb_002552_040 0.0938463097 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
13 Hb_006438_020 0.0942711163 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
14 Hb_006775_120 0.0973259004 - - exonuclease-like protein [Oryza sativa Japonica Group]
15 Hb_019654_020 0.0985180716 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
16 Hb_000229_050 0.1000666487 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
17 Hb_012633_050 0.1003220852 - - zinc finger protein, putative [Ricinus communis]
18 Hb_021596_020 0.1005736382 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
19 Hb_001279_190 0.1007761903 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
20 Hb_002687_180 0.1008455454 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_000926_060 Hb_000926_060 Hb_000579_080 Hb_000579_080 Hb_000926_060--Hb_000579_080 Hb_070624_010 Hb_070624_010 Hb_000926_060--Hb_070624_010 Hb_003680_220 Hb_003680_220 Hb_000926_060--Hb_003680_220 Hb_000500_220 Hb_000500_220 Hb_000926_060--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000926_060--Hb_008725_270 Hb_000358_210 Hb_000358_210 Hb_000926_060--Hb_000358_210 Hb_001504_010 Hb_001504_010 Hb_000579_080--Hb_001504_010 Hb_012633_050 Hb_012633_050 Hb_000579_080--Hb_012633_050 Hb_000229_050 Hb_000229_050 Hb_000579_080--Hb_000229_050 Hb_008206_080 Hb_008206_080 Hb_000579_080--Hb_008206_080 Hb_008304_020 Hb_008304_020 Hb_000579_080--Hb_008304_020 Hb_070624_010--Hb_000358_210 Hb_070624_010--Hb_003680_220 Hb_000645_180 Hb_000645_180 Hb_070624_010--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_070624_010--Hb_000265_070 Hb_029695_070 Hb_029695_070 Hb_070624_010--Hb_029695_070 Hb_003680_220--Hb_008725_270 Hb_002687_200 Hb_002687_200 Hb_003680_220--Hb_002687_200 Hb_003680_220--Hb_000500_220 Hb_009296_020 Hb_009296_020 Hb_003680_220--Hb_009296_020 Hb_000007_090 Hb_000007_090 Hb_003680_220--Hb_000007_090 Hb_000500_220--Hb_008725_270 Hb_000500_220--Hb_002687_200 Hb_011671_120 Hb_011671_120 Hb_000500_220--Hb_011671_120 Hb_000500_220--Hb_009296_020 Hb_008725_270--Hb_000007_090 Hb_003929_180 Hb_003929_180 Hb_008725_270--Hb_003929_180 Hb_008725_270--Hb_002687_200 Hb_000358_210--Hb_000265_070 Hb_002392_020 Hb_002392_020 Hb_000358_210--Hb_002392_020 Hb_003490_060 Hb_003490_060 Hb_000358_210--Hb_003490_060 Hb_002284_100 Hb_002284_100 Hb_000358_210--Hb_002284_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96246 2.60357 10.6011 6.45643 2.55397 2.12538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.0617 2.15323 2.10621 6.06986 6.23052

CAGE analysis