Hb_000926_110

Information

Type -
Description -
Location Contig926: 121985-123690
Sequence    

Annotation

kegg
ID rcu:RCOM_1303640
description Mitogen-activated protein kinase kinase kinase, putative (EC:2.7.11.25)
nr
ID XP_002529924.1
description Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
swissprot
ID Q54R82
description Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2
trembl
ID B9SVA5
description Mitogen-activated protein kinase kinase kinase, putative OS=Ricinus communis GN=RCOM_1303640 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase npk1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62665: 123362-123701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_110 0.0 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
2 Hb_010477_020 0.152299456 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
3 Hb_022137_020 0.1561170579 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
4 Hb_184752_010 0.1645088478 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
5 Hb_101058_020 0.1660300242 - - DWNN domain isoform 2 [Theobroma cacao]
6 Hb_000714_080 0.1671067663 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
7 Hb_158926_010 0.1738277943 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
8 Hb_000819_020 0.1749448283 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
9 Hb_000731_020 0.1765102602 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
10 Hb_034581_010 0.1776171118 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
11 Hb_095575_010 0.1798429829 - - hypothetical protein JCGZ_19529 [Jatropha curcas]
12 Hb_004724_310 0.1800905232 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
13 Hb_008637_020 0.1808140103 - - conserved hypothetical protein [Ricinus communis]
14 Hb_033327_010 0.1811724325 - - SYM8 [Pisum sativum]
15 Hb_000045_140 0.1812810807 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
16 Hb_010136_020 0.1815138784 - - stress-induced receptor-like kinase [Medicago truncatula]
17 Hb_002006_110 0.1817097464 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
18 Hb_001677_140 0.1817195609 - - PREDICTED: uncharacterized protein LOC102622520 isoform X1 [Citrus sinensis]
19 Hb_007894_020 0.1820720752 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
20 Hb_000819_040 0.1827369076 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000926_110 Hb_000926_110 Hb_010477_020 Hb_010477_020 Hb_000926_110--Hb_010477_020 Hb_022137_020 Hb_022137_020 Hb_000926_110--Hb_022137_020 Hb_184752_010 Hb_184752_010 Hb_000926_110--Hb_184752_010 Hb_101058_020 Hb_101058_020 Hb_000926_110--Hb_101058_020 Hb_000714_080 Hb_000714_080 Hb_000926_110--Hb_000714_080 Hb_158926_010 Hb_158926_010 Hb_000926_110--Hb_158926_010 Hb_002548_030 Hb_002548_030 Hb_010477_020--Hb_002548_030 Hb_000359_230 Hb_000359_230 Hb_010477_020--Hb_000359_230 Hb_034581_010 Hb_034581_010 Hb_010477_020--Hb_034581_010 Hb_110356_010 Hb_110356_010 Hb_010477_020--Hb_110356_010 Hb_002252_030 Hb_002252_030 Hb_010477_020--Hb_002252_030 Hb_099188_010 Hb_099188_010 Hb_010477_020--Hb_099188_010 Hb_007894_020 Hb_007894_020 Hb_022137_020--Hb_007894_020 Hb_022137_020--Hb_101058_020 Hb_022137_020--Hb_158926_010 Hb_002542_030 Hb_002542_030 Hb_022137_020--Hb_002542_030 Hb_124677_020 Hb_124677_020 Hb_022137_020--Hb_124677_020 Hb_001999_170 Hb_001999_170 Hb_022137_020--Hb_001999_170 Hb_002006_110 Hb_002006_110 Hb_184752_010--Hb_002006_110 Hb_010136_020 Hb_010136_020 Hb_184752_010--Hb_010136_020 Hb_004724_290 Hb_004724_290 Hb_184752_010--Hb_004724_290 Hb_036754_040 Hb_036754_040 Hb_184752_010--Hb_036754_040 Hb_019978_010 Hb_019978_010 Hb_184752_010--Hb_019978_010 Hb_001677_140 Hb_001677_140 Hb_184752_010--Hb_001677_140 Hb_101058_020--Hb_158926_010 Hb_101058_020--Hb_007894_020 Hb_000665_090 Hb_000665_090 Hb_101058_020--Hb_000665_090 Hb_001894_060 Hb_001894_060 Hb_101058_020--Hb_001894_060 Hb_004079_040 Hb_004079_040 Hb_101058_020--Hb_004079_040 Hb_002066_050 Hb_002066_050 Hb_000714_080--Hb_002066_050 Hb_000714_080--Hb_000665_090 Hb_000925_110 Hb_000925_110 Hb_000714_080--Hb_000925_110 Hb_004724_310 Hb_004724_310 Hb_000714_080--Hb_004724_310 Hb_008963_010 Hb_008963_010 Hb_000714_080--Hb_008963_010 Hb_000904_110 Hb_000904_110 Hb_000714_080--Hb_000904_110 Hb_158926_010--Hb_001894_060 Hb_000808_090 Hb_000808_090 Hb_158926_010--Hb_000808_090 Hb_158926_010--Hb_004079_040 Hb_158926_010--Hb_000665_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28105 16.193 7.66662 7.24936 0.117585 0.250175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.271976 0.0509174 0.108701 0

CAGE analysis