Hb_000926_130

Information

Type transcription factor
Description TF Family: WRKY
Location Contig926: 134225-137939
Sequence    

Annotation

kegg
ID rcu:RCOM_1303670
description WRKY transcription factor, putative
nr
ID XP_002529927.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9XEC3
description Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1
trembl
ID B9SVA8
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1303670 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_130 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_000056_330 0.1137719714 - - unnamed protein product [Vitis vinifera]
3 Hb_007894_250 0.1484918348 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
4 Hb_007072_020 0.1575091535 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
5 Hb_000500_110 0.1668805769 - - Blue copper protein precursor, putative [Ricinus communis]
6 Hb_003096_050 0.1941619427 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001190_060 0.2047785199 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
8 Hb_000140_160 0.2144534106 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
9 Hb_000455_100 0.2286703088 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_000007_110 0.2349815017 - - PREDICTED: peroxidase 11 [Jatropha curcas]
11 Hb_030291_030 0.2352173891 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
12 Hb_007520_040 0.2396717995 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
13 Hb_001045_050 0.2399879974 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
14 Hb_000816_120 0.2421457343 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
15 Hb_000213_130 0.2448350899 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
16 Hb_000445_450 0.25851125 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
17 Hb_002311_240 0.2592251685 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
18 Hb_006355_030 0.2665243216 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
19 Hb_004800_170 0.2685658331 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
20 Hb_010647_010 0.2686782091 - - PREDICTED: protein NP24-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_000926_130 Hb_000926_130 Hb_000056_330 Hb_000056_330 Hb_000926_130--Hb_000056_330 Hb_007894_250 Hb_007894_250 Hb_000926_130--Hb_007894_250 Hb_007072_020 Hb_007072_020 Hb_000926_130--Hb_007072_020 Hb_000500_110 Hb_000500_110 Hb_000926_130--Hb_000500_110 Hb_003096_050 Hb_003096_050 Hb_000926_130--Hb_003096_050 Hb_001190_060 Hb_001190_060 Hb_000926_130--Hb_001190_060 Hb_000056_330--Hb_007894_250 Hb_000056_330--Hb_003096_050 Hb_000056_330--Hb_001190_060 Hb_000056_330--Hb_007072_020 Hb_000975_150 Hb_000975_150 Hb_000056_330--Hb_000975_150 Hb_007894_250--Hb_003096_050 Hb_007894_250--Hb_000975_150 Hb_007894_250--Hb_001190_060 Hb_007894_250--Hb_007072_020 Hb_007072_020--Hb_000500_110 Hb_007520_040 Hb_007520_040 Hb_007072_020--Hb_007520_040 Hb_006355_030 Hb_006355_030 Hb_007072_020--Hb_006355_030 Hb_003057_080 Hb_003057_080 Hb_000500_110--Hb_003057_080 Hb_030291_030 Hb_030291_030 Hb_000500_110--Hb_030291_030 Hb_000045_230 Hb_000045_230 Hb_000500_110--Hb_000045_230 Hb_000140_160 Hb_000140_160 Hb_000500_110--Hb_000140_160 Hb_003096_050--Hb_001190_060 Hb_000816_120 Hb_000816_120 Hb_003096_050--Hb_000816_120 Hb_002311_240 Hb_002311_240 Hb_003096_050--Hb_002311_240 Hb_003096_050--Hb_000975_150 Hb_001190_060--Hb_000816_120 Hb_003992_250 Hb_003992_250 Hb_001190_060--Hb_003992_250 Hb_001190_060--Hb_000140_160 Hb_001190_060--Hb_002311_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.301448 0.847278 0.100349 0.202867 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.540524 4.38916 4.26275 39.5663 0.143973

CAGE analysis