Hb_000926_150

Information

Type -
Description -
Location Contig926: 193615-198827
Sequence    

Annotation

kegg
ID rcu:RCOM_0752240
description RNA binding protein, putative
nr
ID XP_012070868.1
description PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00918 PE=4 SV=1
Gene Ontology
ID GO:0003723
description splicing suppressor of white-apricot homolog isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62671: 193530-197241 , PASA_asmbl_62672: 197068-198856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_150 0.0 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
2 Hb_116349_130 0.0638422289 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
3 Hb_000035_100 0.068062538 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000856_300 0.0713645605 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
5 Hb_001257_100 0.0716727263 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
6 Hb_024650_080 0.0717083246 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
7 Hb_000373_170 0.0749106711 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
8 Hb_008948_140 0.0755317946 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
9 Hb_001862_110 0.0760936031 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
10 Hb_002812_010 0.081944267 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
11 Hb_001408_110 0.083509767 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
12 Hb_000809_170 0.0847043918 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
13 Hb_000173_190 0.0850725054 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000671_080 0.0871844397 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
15 Hb_002768_050 0.0874782705 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
16 Hb_000676_330 0.0879567974 - - protein with unknown function [Ricinus communis]
17 Hb_004223_160 0.0880807234 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
18 Hb_000479_240 0.0905097753 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
19 Hb_001673_050 0.0919650886 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
20 Hb_002849_170 0.0921244133 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000926_150 Hb_000926_150 Hb_116349_130 Hb_116349_130 Hb_000926_150--Hb_116349_130 Hb_000035_100 Hb_000035_100 Hb_000926_150--Hb_000035_100 Hb_000856_300 Hb_000856_300 Hb_000926_150--Hb_000856_300 Hb_001257_100 Hb_001257_100 Hb_000926_150--Hb_001257_100 Hb_024650_080 Hb_024650_080 Hb_000926_150--Hb_024650_080 Hb_000373_170 Hb_000373_170 Hb_000926_150--Hb_000373_170 Hb_116349_130--Hb_000035_100 Hb_004551_020 Hb_004551_020 Hb_116349_130--Hb_004551_020 Hb_003939_060 Hb_003939_060 Hb_116349_130--Hb_003939_060 Hb_005408_030 Hb_005408_030 Hb_116349_130--Hb_005408_030 Hb_000428_030 Hb_000428_030 Hb_116349_130--Hb_000428_030 Hb_033312_130 Hb_033312_130 Hb_000035_100--Hb_033312_130 Hb_000030_140 Hb_000030_140 Hb_000035_100--Hb_000030_140 Hb_008165_020 Hb_008165_020 Hb_000035_100--Hb_008165_020 Hb_000173_190 Hb_000173_190 Hb_000035_100--Hb_000173_190 Hb_003929_210 Hb_003929_210 Hb_000035_100--Hb_003929_210 Hb_008948_140 Hb_008948_140 Hb_000856_300--Hb_008948_140 Hb_000580_050 Hb_000580_050 Hb_000856_300--Hb_000580_050 Hb_001008_100 Hb_001008_100 Hb_000856_300--Hb_001008_100 Hb_000856_300--Hb_000373_170 Hb_000787_200 Hb_000787_200 Hb_000856_300--Hb_000787_200 Hb_000671_080 Hb_000671_080 Hb_001257_100--Hb_000671_080 Hb_026198_060 Hb_026198_060 Hb_001257_100--Hb_026198_060 Hb_002812_010 Hb_002812_010 Hb_001257_100--Hb_002812_010 Hb_000649_250 Hb_000649_250 Hb_001257_100--Hb_000649_250 Hb_002119_090 Hb_002119_090 Hb_001257_100--Hb_002119_090 Hb_001408_110 Hb_001408_110 Hb_024650_080--Hb_001408_110 Hb_016172_030 Hb_016172_030 Hb_024650_080--Hb_016172_030 Hb_022425_030 Hb_022425_030 Hb_024650_080--Hb_022425_030 Hb_000103_290 Hb_000103_290 Hb_024650_080--Hb_000103_290 Hb_000020_160 Hb_000020_160 Hb_024650_080--Hb_000020_160 Hb_000996_020 Hb_000996_020 Hb_000373_170--Hb_000996_020 Hb_004517_020 Hb_004517_020 Hb_000373_170--Hb_004517_020 Hb_000445_060 Hb_000445_060 Hb_000373_170--Hb_000445_060 Hb_001723_010 Hb_001723_010 Hb_000373_170--Hb_001723_010 Hb_000661_120 Hb_000661_120 Hb_000373_170--Hb_000661_120 Hb_002768_050 Hb_002768_050 Hb_000373_170--Hb_002768_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.09091 31.6251 16.2192 18.9344 13.2125 9.35912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.55392 11.9595 6.51032 20.7581 17.9651

CAGE analysis