Hb_000926_190

Information

Type -
Description -
Location Contig926: 219320-229261
Sequence    

Annotation

kegg
ID rcu:RCOM_0752570
description 1,4-alpha-glucan branching enzyme, putative (EC:2.4.1.18)
nr
ID XP_012070880.1
description PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
swissprot
ID D2WL32
description 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE3 PE=1 SV=1
trembl
ID A0A067L518
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00926 PE=4 SV=1
Gene Ontology
ID GO:0003844
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62676: 219350-229243 , PASA_asmbl_62677: 222978-226283 , PASA_asmbl_62678: 219561-220617 , PASA_asmbl_62679: 221646-222700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_190 0.0 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
2 Hb_023386_020 0.0498312096 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
3 Hb_023386_040 0.0518793534 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
4 Hb_007054_060 0.0586570112 - - -
5 Hb_000334_270 0.0596963465 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
6 Hb_000794_050 0.0598340664 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
7 Hb_000879_200 0.0614150342 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
8 Hb_005914_060 0.0614150478 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
9 Hb_008406_110 0.0630209206 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
10 Hb_001390_110 0.063675779 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
11 Hb_033720_010 0.0642482096 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
12 Hb_000179_030 0.0669774512 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
13 Hb_000920_060 0.0684266555 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
14 Hb_002175_030 0.0687996603 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
15 Hb_004412_010 0.0689924185 - - -
16 Hb_000116_180 0.0699591174 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
17 Hb_002823_030 0.070110438 - - -
18 Hb_001258_090 0.0703665626 - - PREDICTED: protein spt2-like [Jatropha curcas]
19 Hb_002518_280 0.070795665 - - phosphate transporter [Manihot esculenta]
20 Hb_000160_210 0.0723615911 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000926_190 Hb_000926_190 Hb_023386_020 Hb_023386_020 Hb_000926_190--Hb_023386_020 Hb_023386_040 Hb_023386_040 Hb_000926_190--Hb_023386_040 Hb_007054_060 Hb_007054_060 Hb_000926_190--Hb_007054_060 Hb_000334_270 Hb_000334_270 Hb_000926_190--Hb_000334_270 Hb_000794_050 Hb_000794_050 Hb_000926_190--Hb_000794_050 Hb_000879_200 Hb_000879_200 Hb_000926_190--Hb_000879_200 Hb_004100_080 Hb_004100_080 Hb_023386_020--Hb_004100_080 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_023386_020--Hb_000879_200 Hb_154745_010 Hb_154745_010 Hb_023386_040--Hb_154745_010 Hb_006252_040 Hb_006252_040 Hb_023386_040--Hb_006252_040 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_000179_030 Hb_000179_030 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070 Hb_003878_070 Hb_003878_070 Hb_007054_060--Hb_003878_070 Hb_001258_090 Hb_001258_090 Hb_007054_060--Hb_001258_090 Hb_007054_060--Hb_023386_040 Hb_007054_060--Hb_000179_030 Hb_007054_060--Hb_023386_020 Hb_010068_040 Hb_010068_040 Hb_000334_270--Hb_010068_040 Hb_003849_060 Hb_003849_060 Hb_000334_270--Hb_003849_060 Hb_033153_070 Hb_033153_070 Hb_000334_270--Hb_033153_070 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_002175_030 Hb_002175_030 Hb_000334_270--Hb_002175_030 Hb_000368_020 Hb_000368_020 Hb_000794_050--Hb_000368_020 Hb_000794_050--Hb_033720_010 Hb_001390_110 Hb_001390_110 Hb_000794_050--Hb_001390_110 Hb_000853_230 Hb_000853_230 Hb_000794_050--Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_000794_050--Hb_006620_020 Hb_001926_030 Hb_001926_030 Hb_000879_200--Hb_001926_030 Hb_000879_200--Hb_006620_020 Hb_001595_030 Hb_001595_030 Hb_000879_200--Hb_001595_030 Hb_000879_200--Hb_000853_230 Hb_000879_200--Hb_002518_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.11754 4.06674 2.99373 1.91875 5.51969 6.02878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.95062 4.24627 2.69595 3.25145 3.33104

CAGE analysis