Hb_000926_280

Information

Type -
Description -
Location Contig926: 284716-289674
Sequence    

Annotation

kegg
ID rcu:RCOM_0753070
description ubiquitin-activating enzyme E1, putative
nr
ID XP_002529467.1
description ubiquitin-activating enzyme E1, putative [Ricinus communis]
swissprot
ID Q9ZNW0
description Adenylyltransferase and sulfurtransferase MOCS3 OS=Arabidopsis thaliana GN=MOCS3 PE=2 SV=1
trembl
ID B9STZ8
description Adenylyltransferase and sulfurtransferase MOCS3 OS=Ricinus communis GN=MOCS3 PE=3 SV=1
Gene Ontology
ID GO:0005829
description adenylyltransferase and sulfurtransferase mocs3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62692: 285022-287130 , PASA_asmbl_62706: 287237-289549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_280 0.0 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
2 Hb_003175_010 0.0491648005 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
3 Hb_000030_300 0.0589328027 - - Thioredoxin, putative [Ricinus communis]
4 Hb_007951_060 0.0595503265 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_011689_080 0.060195303 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
6 Hb_002391_300 0.0602944195 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
7 Hb_000327_120 0.0603288004 - - FGFR1 oncogene partner, putative [Ricinus communis]
8 Hb_003766_040 0.0621643217 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000395_170 0.0639637762 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
10 Hb_000808_270 0.0649581931 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
11 Hb_000089_220 0.0668565981 - - PREDICTED: protein FAM133-like [Populus euphratica]
12 Hb_004109_090 0.0689648186 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000076_120 0.069846158 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
14 Hb_001677_210 0.0708976708 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
15 Hb_003929_160 0.0710970418 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
16 Hb_002043_190 0.0714039526 - - rwd domain-containing protein, putative [Ricinus communis]
17 Hb_048937_040 0.071931854 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
18 Hb_001305_010 0.0721144027 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
19 Hb_003001_120 0.0721745251 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
20 Hb_009557_070 0.0721848657 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000926_280 Hb_000926_280 Hb_003175_010 Hb_003175_010 Hb_000926_280--Hb_003175_010 Hb_000030_300 Hb_000030_300 Hb_000926_280--Hb_000030_300 Hb_007951_060 Hb_007951_060 Hb_000926_280--Hb_007951_060 Hb_011689_080 Hb_011689_080 Hb_000926_280--Hb_011689_080 Hb_002391_300 Hb_002391_300 Hb_000926_280--Hb_002391_300 Hb_000327_120 Hb_000327_120 Hb_000926_280--Hb_000327_120 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_019280_040 Hb_019280_040 Hb_003175_010--Hb_019280_040 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_048937_040 Hb_048937_040 Hb_003175_010--Hb_048937_040 Hb_002026_180 Hb_002026_180 Hb_000030_300--Hb_002026_180 Hb_002496_030 Hb_002496_030 Hb_000030_300--Hb_002496_030 Hb_001242_060 Hb_001242_060 Hb_000030_300--Hb_001242_060 Hb_000030_300--Hb_000808_270 Hb_001305_010 Hb_001305_010 Hb_007951_060--Hb_001305_010 Hb_007951_060--Hb_000327_120 Hb_001439_150 Hb_001439_150 Hb_007951_060--Hb_001439_150 Hb_003417_020 Hb_003417_020 Hb_007951_060--Hb_003417_020 Hb_007576_040 Hb_007576_040 Hb_007951_060--Hb_007576_040 Hb_000398_180 Hb_000398_180 Hb_011689_080--Hb_000398_180 Hb_003058_130 Hb_003058_130 Hb_011689_080--Hb_003058_130 Hb_003392_040 Hb_003392_040 Hb_011689_080--Hb_003392_040 Hb_004324_310 Hb_004324_310 Hb_011689_080--Hb_004324_310 Hb_003001_120 Hb_003001_120 Hb_011689_080--Hb_003001_120 Hb_001377_290 Hb_001377_290 Hb_011689_080--Hb_001377_290 Hb_000373_240 Hb_000373_240 Hb_002391_300--Hb_000373_240 Hb_003406_010 Hb_003406_010 Hb_002391_300--Hb_003406_010 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_012092_010 Hb_012092_010 Hb_002391_300--Hb_012092_010 Hb_007218_080 Hb_007218_080 Hb_002391_300--Hb_007218_080 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.1895 17.2473 24.4407 15.933 38.3984 48.322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.0589 37.8422 37.1319 23.5775 14.7419

CAGE analysis