Hb_000926_300

Information

Type -
Description -
Location Contig926: 294443-299084
Sequence    

Annotation

kegg
ID pmum:103326537
description small ubiquitin-related modifier 1
nr
ID XP_012070895.1
description PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
swissprot
ID P55852
description Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana GN=SUMO1 PE=1 SV=2
trembl
ID A0A067KW36
description Small ubiquitin-related modifier OS=Jatropha curcas GN=JCGZ_00940 PE=3 SV=1
Gene Ontology
ID GO:0005515
description small ubiquitin-related modifier 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62697: 296343-299081
cDNA
(Sanger)
(ID:Location)		 001_H04.ab1: 296368-299081

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_300 0.0 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
2 Hb_000007_100 0.0516132994 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
3 Hb_128048_010 0.0538104675 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
4 Hb_003599_040 0.0548897076 - - unnamed protein product [Vitis vinifera]
5 Hb_012573_070 0.0607620467 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002284_240 0.0657437503 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
7 Hb_000307_090 0.0687699174 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
8 Hb_009793_010 0.0710618324 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
9 Hb_032202_090 0.0731371601 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
10 Hb_000000_170 0.0738828056 - - defender against cell death, putative [Ricinus communis]
11 Hb_002685_190 0.0740547193 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
12 Hb_159809_020 0.0749594624 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000630_060 0.0774035906 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
14 Hb_001117_090 0.0782876317 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
15 Hb_002686_020 0.0785228757 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
16 Hb_001016_030 0.0789813149 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
17 Hb_001818_020 0.0794349596 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
18 Hb_033153_090 0.0795465992 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
19 Hb_000926_250 0.0796189981 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
20 Hb_001235_190 0.0806608025 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000926_300 Hb_000926_300 Hb_000007_100 Hb_000007_100 Hb_000926_300--Hb_000007_100 Hb_128048_010 Hb_128048_010 Hb_000926_300--Hb_128048_010 Hb_003599_040 Hb_003599_040 Hb_000926_300--Hb_003599_040 Hb_012573_070 Hb_012573_070 Hb_000926_300--Hb_012573_070 Hb_002284_240 Hb_002284_240 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090 Hb_000926_250 Hb_000926_250 Hb_000007_100--Hb_000926_250 Hb_000380_190 Hb_000380_190 Hb_000007_100--Hb_000380_190 Hb_000007_100--Hb_002284_240 Hb_009793_010 Hb_009793_010 Hb_000007_100--Hb_009793_010 Hb_000007_100--Hb_003599_040 Hb_000000_170 Hb_000000_170 Hb_128048_010--Hb_000000_170 Hb_002811_260 Hb_002811_260 Hb_128048_010--Hb_002811_260 Hb_175215_010 Hb_175215_010 Hb_128048_010--Hb_175215_010 Hb_003878_010 Hb_003878_010 Hb_128048_010--Hb_003878_010 Hb_181288_010 Hb_181288_010 Hb_128048_010--Hb_181288_010 Hb_003599_040--Hb_002284_240 Hb_159809_020 Hb_159809_020 Hb_003599_040--Hb_159809_020 Hb_002685_190 Hb_002685_190 Hb_003599_040--Hb_002685_190 Hb_000327_190 Hb_000327_190 Hb_003599_040--Hb_000327_190 Hb_000545_150 Hb_000545_150 Hb_012573_070--Hb_000545_150 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_002284_240--Hb_159809_020 Hb_002284_240--Hb_000926_250 Hb_000020_060 Hb_000020_060 Hb_002284_240--Hb_000020_060 Hb_002284_240--Hb_000327_190 Hb_005736_060 Hb_005736_060 Hb_000307_090--Hb_005736_060 Hb_000307_090--Hb_159809_020 Hb_001235_190 Hb_001235_190 Hb_000307_090--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_000307_090--Hb_002963_010 Hb_000307_090--Hb_003599_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1637 12.0275 16.64 17.1186 28.493 35.1513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.4119 67.5832 22.8215 18.6459 11.9401

CAGE analysis