Hb_000926_310

Information

Type -
Description -
Location Contig926: 301650-304645
Sequence    

Annotation

kegg
ID gmx:100500241
description uncharacterized LOC100500241
nr
ID NP_001235208.1
description uncharacterized protein LOC100500241 [Glycine max]
swissprot
ID P55857
description Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1 SV=1
trembl
ID C6T142
description Small ubiquitin-related modifier OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0005515
description small ubiquitin-related modifier 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62695: 301693-304717 , PASA_asmbl_62699: 303700-303834 , PASA_asmbl_62700: 304003-304563
cDNA
(Sanger)
(ID:Location)		 006_F21.ab1: 301776-304717 , 006_G13.ab1: 301700-304717 , 012_F15.ab1: 301774-304717 , 012_I22.ab1: 301774-304713 , 013_N06.ab1: 301774-304717 , 016_L17.ab1: 301775-304716 , 017_G17.ab1: 301774-304717 , 020_C13.ab1: 301774-304716 , 048_P09.ab1: 301694-304717

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_310 0.0 - - uncharacterized protein LOC100500241 [Glycine max]
2 Hb_002639_150 0.0535581383 - - -
3 Hb_000661_140 0.0633286625 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
4 Hb_020367_050 0.0648678263 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
5 Hb_003687_230 0.0713315787 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
6 Hb_005288_150 0.0732963675 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
7 Hb_000368_020 0.0742732886 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
8 Hb_004785_190 0.0761074292 - - PHD finger family protein [Populus trichocarpa]
9 Hb_000649_070 0.0781760953 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
10 Hb_000260_100 0.0783289665 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002192_080 0.0787794132 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
12 Hb_106552_050 0.0788409275 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
13 Hb_001329_130 0.0794763856 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006960_050 0.0809214767 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
15 Hb_032208_040 0.082258876 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
16 Hb_001926_030 0.0834043523 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
17 Hb_000610_010 0.0856081127 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
18 Hb_008803_090 0.0857566223 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
19 Hb_000576_050 0.0870862302 - - Kinase superfamily protein [Theobroma cacao]
20 Hb_001357_090 0.0880493955 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000926_310 Hb_000926_310 Hb_002639_150 Hb_002639_150 Hb_000926_310--Hb_002639_150 Hb_000661_140 Hb_000661_140 Hb_000926_310--Hb_000661_140 Hb_020367_050 Hb_020367_050 Hb_000926_310--Hb_020367_050 Hb_003687_230 Hb_003687_230 Hb_000926_310--Hb_003687_230 Hb_005288_150 Hb_005288_150 Hb_000926_310--Hb_005288_150 Hb_000368_020 Hb_000368_020 Hb_000926_310--Hb_000368_020 Hb_002639_150--Hb_000661_140 Hb_002639_150--Hb_005288_150 Hb_058972_010 Hb_058972_010 Hb_002639_150--Hb_058972_010 Hb_002639_150--Hb_003687_230 Hb_002639_150--Hb_020367_050 Hb_011013_010 Hb_011013_010 Hb_000661_140--Hb_011013_010 Hb_004785_190 Hb_004785_190 Hb_000661_140--Hb_004785_190 Hb_000661_140--Hb_005288_150 Hb_000661_140--Hb_020367_050 Hb_032208_040 Hb_032208_040 Hb_020367_050--Hb_032208_040 Hb_001329_130 Hb_001329_130 Hb_020367_050--Hb_001329_130 Hb_020367_050--Hb_005288_150 Hb_006960_050 Hb_006960_050 Hb_020367_050--Hb_006960_050 Hb_007982_080 Hb_007982_080 Hb_020367_050--Hb_007982_080 Hb_000610_010 Hb_000610_010 Hb_003687_230--Hb_000610_010 Hb_003292_040 Hb_003292_040 Hb_003687_230--Hb_003292_040 Hb_000009_530 Hb_000009_530 Hb_003687_230--Hb_000009_530 Hb_003687_230--Hb_001329_130 Hb_003078_040 Hb_003078_040 Hb_003687_230--Hb_003078_040 Hb_000260_100 Hb_000260_100 Hb_005288_150--Hb_000260_100 Hb_000141_250 Hb_000141_250 Hb_005288_150--Hb_000141_250 Hb_002997_080 Hb_002997_080 Hb_005288_150--Hb_002997_080 Hb_005288_150--Hb_001329_130 Hb_000794_050 Hb_000794_050 Hb_000368_020--Hb_000794_050 Hb_003467_010 Hb_003467_010 Hb_000368_020--Hb_003467_010 Hb_000368_020--Hb_006960_050 Hb_106552_050 Hb_106552_050 Hb_000368_020--Hb_106552_050 Hb_006824_060 Hb_006824_060 Hb_000368_020--Hb_006824_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
483.618 259.565 377.301 143.642 349.382 331.826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
288.324 308.387 222.957 122.73 146.594

CAGE analysis