Hb_000926_330

Information

Type transcription factor
Description TF Family: ERF
Location Contig926: 313699-314421
Sequence    

Annotation

kegg
ID rcu:RCOM_0546450
description Ethylene-responsive transcription factor, putative
nr
ID NP_001295747.1
description ethylene-responsive transcription factor 3-like [Jatropha curcas]
swissprot
ID O80339
description Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1
trembl
ID A0A068BGH5
description C-repeat binding transcription factor 2 OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62694: 313382-314606 , PASA_asmbl_62702: 288623-319646
cDNA
(Sanger)
(ID:Location)		 034_K13.ab1: 313384-314111 , 036_N08.ab1: 313382-314125

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_330 0.0 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
2 Hb_000224_170 0.0720350916 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
3 Hb_003376_350 0.0783157436 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
4 Hb_031527_040 0.0792164866 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
5 Hb_004907_110 0.0815363697 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
6 Hb_000061_420 0.0837528358 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
7 Hb_000181_070 0.0847814552 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_004785_060 0.0868096058 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
9 Hb_000445_180 0.087384449 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
10 Hb_003058_190 0.0889827146 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
11 Hb_002631_060 0.089284723 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
12 Hb_000203_160 0.0914701613 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
13 Hb_010175_020 0.0940853601 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000260_270 0.0954389947 - - zinc finger protein, putative [Ricinus communis]
15 Hb_181235_010 0.0980357618 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
16 Hb_000395_190 0.0984454381 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
17 Hb_000125_170 0.0997583081 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
18 Hb_004128_060 0.1002713131 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
19 Hb_010128_080 0.1006545525 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
20 Hb_018790_060 0.1008034339 - - hypothetical protein JCGZ_21628 [Jatropha curcas]

Gene co-expression network

sample Hb_000926_330 Hb_000926_330 Hb_000224_170 Hb_000224_170 Hb_000926_330--Hb_000224_170 Hb_003376_350 Hb_003376_350 Hb_000926_330--Hb_003376_350 Hb_031527_040 Hb_031527_040 Hb_000926_330--Hb_031527_040 Hb_004907_110 Hb_004907_110 Hb_000926_330--Hb_004907_110 Hb_000061_420 Hb_000061_420 Hb_000926_330--Hb_000061_420 Hb_000181_070 Hb_000181_070 Hb_000926_330--Hb_000181_070 Hb_001623_420 Hb_001623_420 Hb_000224_170--Hb_001623_420 Hb_000224_170--Hb_031527_040 Hb_000224_170--Hb_000061_420 Hb_181235_010 Hb_181235_010 Hb_000224_170--Hb_181235_010 Hb_003777_330 Hb_003777_330 Hb_000224_170--Hb_003777_330 Hb_003376_350--Hb_004907_110 Hb_002631_060 Hb_002631_060 Hb_003376_350--Hb_002631_060 Hb_004994_140 Hb_004994_140 Hb_003376_350--Hb_004994_140 Hb_000189_560 Hb_000189_560 Hb_003376_350--Hb_000189_560 Hb_007532_030 Hb_007532_030 Hb_003376_350--Hb_007532_030 Hb_001242_060 Hb_001242_060 Hb_031527_040--Hb_001242_060 Hb_000563_320 Hb_000563_320 Hb_031527_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_031527_040--Hb_000016_250 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040 Hb_000805_020 Hb_000805_020 Hb_004907_110--Hb_000805_020 Hb_004907_110--Hb_007532_030 Hb_008725_260 Hb_008725_260 Hb_004907_110--Hb_008725_260 Hb_004907_110--Hb_031527_040 Hb_000876_070 Hb_000876_070 Hb_004907_110--Hb_000876_070 Hb_004907_110--Hb_002631_060 Hb_003680_200 Hb_003680_200 Hb_000061_420--Hb_003680_200 Hb_018790_060 Hb_018790_060 Hb_000061_420--Hb_018790_060 Hb_000291_110 Hb_000291_110 Hb_000061_420--Hb_000291_110 Hb_000061_420--Hb_181235_010 Hb_000125_170 Hb_000125_170 Hb_000181_070--Hb_000125_170 Hb_000181_070--Hb_007416_180 Hb_000512_060 Hb_000512_060 Hb_000181_070--Hb_000512_060 Hb_000230_120 Hb_000230_120 Hb_000181_070--Hb_000230_120 Hb_000181_070--Hb_031527_040 Hb_000181_070--Hb_007532_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.1599 77.4908 17.8328 43.7087 86.2344 60.8985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.367 75.6048 96.3954 39.641 27.1724

CAGE analysis