Hb_000927_020

Information

Type -
Description -
Location Contig927: 17950-23112
Sequence    

Annotation

kegg
ID rcu:RCOM_1621450
description synaptosomal associated protein, putative
nr
ID XP_002512109.1
description synaptosomal associated protein, putative [Ricinus communis]
swissprot
ID Q9LMG8
description Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=3 SV=1
trembl
ID B9RCW1
description Synaptosomal associated protein, putative OS=Ricinus communis GN=RCOM_1621450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000927_020 0.0 - - synaptosomal associated protein, putative [Ricinus communis]
2 Hb_028420_020 0.117564449 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
3 Hb_005016_050 0.1187031683 - - -
4 Hb_000567_030 0.123988635 - - hypothetical protein JCGZ_21550 [Jatropha curcas]
5 Hb_005862_010 0.127943546 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
6 Hb_000795_060 0.1292727021 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
7 Hb_001454_260 0.1299463067 - - hypothetical protein RCOM_0681280 [Ricinus communis]
8 Hb_002596_040 0.1300626195 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
9 Hb_000155_180 0.1315533307 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
10 Hb_008695_040 0.1331972718 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
11 Hb_003912_090 0.1332797916 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
12 Hb_002301_280 0.1374985215 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
13 Hb_184570_010 0.1389717579 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
14 Hb_002662_030 0.141122013 - - PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2 [Jatropha curcas]
15 Hb_000193_270 0.1412576649 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
16 Hb_023732_090 0.1418560826 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_022461_010 0.142257422 - - -
18 Hb_005400_030 0.1426966949 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
19 Hb_071130_030 0.1427666775 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
20 Hb_003266_050 0.1431684084 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]

Gene co-expression network

sample Hb_000927_020 Hb_000927_020 Hb_028420_020 Hb_028420_020 Hb_000927_020--Hb_028420_020 Hb_005016_050 Hb_005016_050 Hb_000927_020--Hb_005016_050 Hb_000567_030 Hb_000567_030 Hb_000927_020--Hb_000567_030 Hb_005862_010 Hb_005862_010 Hb_000927_020--Hb_005862_010 Hb_000795_060 Hb_000795_060 Hb_000927_020--Hb_000795_060 Hb_001454_260 Hb_001454_260 Hb_000927_020--Hb_001454_260 Hb_003912_090 Hb_003912_090 Hb_028420_020--Hb_003912_090 Hb_021238_050 Hb_021238_050 Hb_028420_020--Hb_021238_050 Hb_028420_020--Hb_005862_010 Hb_020665_040 Hb_020665_040 Hb_028420_020--Hb_020665_040 Hb_028420_020--Hb_005016_050 Hb_003038_210 Hb_003038_210 Hb_028420_020--Hb_003038_210 Hb_009117_030 Hb_009117_030 Hb_005016_050--Hb_009117_030 Hb_023732_090 Hb_023732_090 Hb_005016_050--Hb_023732_090 Hb_027472_150 Hb_027472_150 Hb_005016_050--Hb_027472_150 Hb_005016_050--Hb_003912_090 Hb_003333_060 Hb_003333_060 Hb_005016_050--Hb_003333_060 Hb_000193_270 Hb_000193_270 Hb_005016_050--Hb_000193_270 Hb_005056_060 Hb_005056_060 Hb_000567_030--Hb_005056_060 Hb_004108_080 Hb_004108_080 Hb_000567_030--Hb_004108_080 Hb_005389_150 Hb_005389_150 Hb_000567_030--Hb_005389_150 Hb_000086_380 Hb_000086_380 Hb_000567_030--Hb_000086_380 Hb_000003_080 Hb_000003_080 Hb_000567_030--Hb_000003_080 Hb_003266_050 Hb_003266_050 Hb_000567_030--Hb_003266_050 Hb_004934_070 Hb_004934_070 Hb_005862_010--Hb_004934_070 Hb_000494_040 Hb_000494_040 Hb_005862_010--Hb_000494_040 Hb_144598_030 Hb_144598_030 Hb_005862_010--Hb_144598_030 Hb_004072_020 Hb_004072_020 Hb_005862_010--Hb_004072_020 Hb_005862_010--Hb_003912_090 Hb_137403_010 Hb_137403_010 Hb_005862_010--Hb_137403_010 Hb_000795_060--Hb_001454_260 Hb_000795_060--Hb_000003_080 Hb_001842_100 Hb_001842_100 Hb_000795_060--Hb_001842_100 Hb_010423_040 Hb_010423_040 Hb_000795_060--Hb_010423_040 Hb_000272_020 Hb_000272_020 Hb_000795_060--Hb_000272_020 Hb_001421_060 Hb_001421_060 Hb_000795_060--Hb_001421_060 Hb_003581_100 Hb_003581_100 Hb_001454_260--Hb_003581_100 Hb_033153_090 Hb_033153_090 Hb_001454_260--Hb_033153_090 Hb_001454_260--Hb_001421_060 Hb_011781_030 Hb_011781_030 Hb_001454_260--Hb_011781_030 Hb_005400_030 Hb_005400_030 Hb_001454_260--Hb_005400_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6211 9.07367 13.7323 20.3892 12.6738 60.4567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.4019 35.2938 11.3182 18.6614 18.679

CAGE analysis