Hb_000927_040

Information

Type -
Description -
Location Contig927: 37883-39417
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62722: 38266-38812
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000927_040 0.0 - - -
2 Hb_036702_010 0.1843004308 - - phosphoprotein phosphatase, putative [Ricinus communis]
3 Hb_011953_030 0.1921701259 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
4 Hb_007933_020 0.1962093935 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
5 Hb_000258_020 0.1984265346 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
6 Hb_001916_120 0.218067931 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
7 Hb_001677_050 0.2181670865 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
8 Hb_001632_010 0.219725102 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
9 Hb_001014_130 0.2234372579 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
10 Hb_000258_290 0.2286642245 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
11 Hb_029921_020 0.2295407271 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
12 Hb_000997_410 0.2341520988 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
13 Hb_001019_120 0.2347374702 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
14 Hb_000256_210 0.2467664352 - - PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
15 Hb_002742_070 0.2487944664 - - PREDICTED: villin-4-like [Jatropha curcas]
16 Hb_002159_030 0.2491286047 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
17 Hb_001138_010 0.2503140937 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000100_130 0.2522826419 - - hypothetical protein VITISV_026702 [Vitis vinifera]
19 Hb_088542_010 0.2542651941 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
20 Hb_000330_160 0.2556617176 - - hypothetical protein JCGZ_04462 [Jatropha curcas]

Gene co-expression network

sample Hb_000927_040 Hb_000927_040 Hb_036702_010 Hb_036702_010 Hb_000927_040--Hb_036702_010 Hb_011953_030 Hb_011953_030 Hb_000927_040--Hb_011953_030 Hb_007933_020 Hb_007933_020 Hb_000927_040--Hb_007933_020 Hb_000258_020 Hb_000258_020 Hb_000927_040--Hb_000258_020 Hb_001916_120 Hb_001916_120 Hb_000927_040--Hb_001916_120 Hb_001677_050 Hb_001677_050 Hb_000927_040--Hb_001677_050 Hb_001019_120 Hb_001019_120 Hb_036702_010--Hb_001019_120 Hb_001014_130 Hb_001014_130 Hb_036702_010--Hb_001014_130 Hb_002742_070 Hb_002742_070 Hb_036702_010--Hb_002742_070 Hb_036702_010--Hb_011953_030 Hb_000330_160 Hb_000330_160 Hb_036702_010--Hb_000330_160 Hb_000062_060 Hb_000062_060 Hb_036702_010--Hb_000062_060 Hb_011953_030--Hb_002742_070 Hb_011953_030--Hb_000330_160 Hb_000997_410 Hb_000997_410 Hb_011953_030--Hb_000997_410 Hb_001040_120 Hb_001040_120 Hb_011953_030--Hb_001040_120 Hb_002815_060 Hb_002815_060 Hb_011953_030--Hb_002815_060 Hb_003436_050 Hb_003436_050 Hb_011953_030--Hb_003436_050 Hb_007933_020--Hb_001019_120 Hb_012384_050 Hb_012384_050 Hb_007933_020--Hb_012384_050 Hb_007933_020--Hb_000258_020 Hb_029921_020 Hb_029921_020 Hb_007933_020--Hb_029921_020 Hb_002159_030 Hb_002159_030 Hb_007933_020--Hb_002159_030 Hb_000258_020--Hb_001916_120 Hb_002234_220 Hb_002234_220 Hb_000258_020--Hb_002234_220 Hb_001277_410 Hb_001277_410 Hb_000258_020--Hb_001277_410 Hb_001138_010 Hb_001138_010 Hb_000258_020--Hb_001138_010 Hb_000028_640 Hb_000028_640 Hb_000258_020--Hb_000028_640 Hb_001916_120--Hb_001138_010 Hb_000252_090 Hb_000252_090 Hb_001916_120--Hb_000252_090 Hb_001916_120--Hb_001277_410 Hb_000365_260 Hb_000365_260 Hb_001916_120--Hb_000365_260 Hb_004324_240 Hb_004324_240 Hb_001916_120--Hb_004324_240 Hb_018954_020 Hb_018954_020 Hb_001916_120--Hb_018954_020 Hb_001632_010 Hb_001632_010 Hb_001677_050--Hb_001632_010 Hb_088542_010 Hb_088542_010 Hb_001677_050--Hb_088542_010 Hb_004007_150 Hb_004007_150 Hb_001677_050--Hb_004007_150 Hb_000605_010 Hb_000605_010 Hb_001677_050--Hb_000605_010 Hb_001677_050--Hb_001138_010 Hb_073212_010 Hb_073212_010 Hb_001677_050--Hb_073212_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51582 0.185193 0.115989 0.526458 0.642801 1.20482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.118232 0.406492 0.393018

CAGE analysis