Hb_000928_020

Information

Type -
Description -
Location Contig928: 9748-12411
Sequence    

Annotation

kegg
ID cic:CICLE_v10013682mg
description hypothetical protein
nr
ID XP_006430222.1
description hypothetical protein CICLE_v10013682mg [Citrus clementina]
swissprot
ID Q8LBM4
description Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2
trembl
ID V4SRV7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013682mg PE=4 SV=1
Gene Ontology
ID GO:0005198
description iron-sulfur assembly mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62741: 9824-12352
cDNA
(Sanger)
(ID:Location)		 006_E16.ab1: 9831-12299 , 030_L14.ab1: 9823-12107 , 035_P22.ab1: 9799-12221

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_020 0.0 - - hypothetical protein CICLE_v10013682mg [Citrus clementina]
2 Hb_000096_010 0.0924141034 - - PREDICTED: U-box domain-containing protein 30-like [Citrus sinensis]
3 Hb_004046_020 0.1005240302 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
4 Hb_003206_070 0.1028345337 - - organic anion transporter, putative [Ricinus communis]
5 Hb_000749_220 0.1061735951 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
6 Hb_000138_110 0.1087688284 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
7 Hb_003177_030 0.1117976577 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
8 Hb_044736_010 0.1120401837 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_005490_030 0.1125654488 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
10 Hb_003470_090 0.1129343225 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
11 Hb_050454_010 0.1143147319 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
12 Hb_000092_010 0.1153931844 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
13 Hb_155159_020 0.1154664637 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
14 Hb_027746_010 0.1160448772 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD6 isoform X1 [Jatropha curcas]
15 Hb_003571_030 0.1161725553 - - hypothetical protein JCGZ_25894 [Jatropha curcas]
16 Hb_000483_220 0.1161935262 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
17 Hb_145314_010 0.1163197006 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
18 Hb_004607_050 0.1170453024 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
19 Hb_000723_130 0.1174909347 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
20 Hb_000169_090 0.1184609593 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000928_020 Hb_000928_020 Hb_000096_010 Hb_000096_010 Hb_000928_020--Hb_000096_010 Hb_004046_020 Hb_004046_020 Hb_000928_020--Hb_004046_020 Hb_003206_070 Hb_003206_070 Hb_000928_020--Hb_003206_070 Hb_000749_220 Hb_000749_220 Hb_000928_020--Hb_000749_220 Hb_000138_110 Hb_000138_110 Hb_000928_020--Hb_000138_110 Hb_003177_030 Hb_003177_030 Hb_000928_020--Hb_003177_030 Hb_000538_070 Hb_000538_070 Hb_000096_010--Hb_000538_070 Hb_000096_010--Hb_000749_220 Hb_000130_050 Hb_000130_050 Hb_000096_010--Hb_000130_050 Hb_000096_010--Hb_003177_030 Hb_002809_050 Hb_002809_050 Hb_000096_010--Hb_002809_050 Hb_002998_060 Hb_002998_060 Hb_000096_010--Hb_002998_060 Hb_000169_090 Hb_000169_090 Hb_004046_020--Hb_000169_090 Hb_000898_040 Hb_000898_040 Hb_004046_020--Hb_000898_040 Hb_005054_100 Hb_005054_100 Hb_004046_020--Hb_005054_100 Hb_007545_030 Hb_007545_030 Hb_004046_020--Hb_007545_030 Hb_002299_060 Hb_002299_060 Hb_004046_020--Hb_002299_060 Hb_000409_020 Hb_000409_020 Hb_003206_070--Hb_000409_020 Hb_001818_090 Hb_001818_090 Hb_003206_070--Hb_001818_090 Hb_000676_250 Hb_000676_250 Hb_003206_070--Hb_000676_250 Hb_005663_060 Hb_005663_060 Hb_003206_070--Hb_005663_060 Hb_003206_070--Hb_003177_030 Hb_007441_120 Hb_007441_120 Hb_003206_070--Hb_007441_120 Hb_000749_220--Hb_003177_030 Hb_000172_290 Hb_000172_290 Hb_000749_220--Hb_000172_290 Hb_000477_060 Hb_000477_060 Hb_000749_220--Hb_000477_060 Hb_000003_250 Hb_000003_250 Hb_000749_220--Hb_000003_250 Hb_005490_030 Hb_005490_030 Hb_000749_220--Hb_005490_030 Hb_001159_130 Hb_001159_130 Hb_000749_220--Hb_001159_130 Hb_000092_010 Hb_000092_010 Hb_000138_110--Hb_000092_010 Hb_004079_030 Hb_004079_030 Hb_000138_110--Hb_004079_030 Hb_000258_270 Hb_000258_270 Hb_000138_110--Hb_000258_270 Hb_000629_120 Hb_000629_120 Hb_000138_110--Hb_000629_120 Hb_000138_110--Hb_000096_010 Hb_002027_040 Hb_002027_040 Hb_000138_110--Hb_002027_040 Hb_001009_270 Hb_001009_270 Hb_003177_030--Hb_001009_270 Hb_005144_160 Hb_005144_160 Hb_003177_030--Hb_005144_160 Hb_003177_030--Hb_000676_250 Hb_003177_030--Hb_001159_130 Hb_000019_030 Hb_000019_030 Hb_003177_030--Hb_000019_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5118 4.24305 4.65018 12.6584 7.4835 11.5254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.00799 7.08457 19.3743 10.1936 4.96197

CAGE analysis