Hb_000928_050

Information

Type -
Description -
Location Contig928: 26197-27074
Sequence    

Annotation

kegg
ID rcu:RCOM_1517510
description delta DNA polymerase, putative
nr
ID XP_012070271.1
description PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
swissprot
ID Q3T0X9
description DNA polymerase delta subunit 4 OS=Bos taurus GN=POLD4 PE=1 SV=1
trembl
ID A0A067L638
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02579 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna polymerase delta subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62745: 26250-27187
cDNA
(Sanger)
(ID:Location)		 020_P23.ab1: 26250-27151 , 021_F01.ab1: 26250-27150

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_050 0.0 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
2 Hb_001711_050 0.2049843251 - - -
3 Hb_071869_010 0.2084050984 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
4 Hb_002154_070 0.2139255647 desease resistance Gene Name: AAA_25 hypothetical protein Csa_6G014750 [Cucumis sativus]
5 Hb_010534_050 0.2349415873 - - PREDICTED: 40S ribosomal protein S7 [Jatropha curcas]
6 Hb_006960_010 0.2421846601 - - conserved hypothetical protein [Ricinus communis]
7 Hb_141296_010 0.2473857515 - - -
8 Hb_004333_050 0.2481910236 - - -
9 Hb_138462_010 0.2591843117 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
10 Hb_000206_190 0.2593868269 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
11 Hb_004244_010 0.2625640331 - - hypothetical protein JCGZ_06191 [Jatropha curcas]
12 Hb_176825_010 0.268885883 - - PREDICTED: uncharacterized protein LOC105630857 isoform X2 [Jatropha curcas]
13 Hb_174473_010 0.2701877047 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
14 Hb_028912_040 0.271173219 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
15 Hb_000256_070 0.2716274549 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
16 Hb_012738_030 0.2775257819 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002863_120 0.2827441226 desease resistance Gene Name: AAA_17 JHL25H03.3 [Jatropha curcas]
18 Hb_004224_020 0.2829247153 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
19 Hb_006274_040 0.2848068783 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
20 Hb_000853_400 0.2849926073 - - PREDICTED: CTP synthase [Jatropha curcas]

Gene co-expression network

sample Hb_000928_050 Hb_000928_050 Hb_001711_050 Hb_001711_050 Hb_000928_050--Hb_001711_050 Hb_071869_010 Hb_071869_010 Hb_000928_050--Hb_071869_010 Hb_002154_070 Hb_002154_070 Hb_000928_050--Hb_002154_070 Hb_010534_050 Hb_010534_050 Hb_000928_050--Hb_010534_050 Hb_006960_010 Hb_006960_010 Hb_000928_050--Hb_006960_010 Hb_141296_010 Hb_141296_010 Hb_000928_050--Hb_141296_010 Hb_160715_010 Hb_160715_010 Hb_001711_050--Hb_160715_010 Hb_002863_120 Hb_002863_120 Hb_001711_050--Hb_002863_120 Hb_000256_070 Hb_000256_070 Hb_001711_050--Hb_000256_070 Hb_138462_010 Hb_138462_010 Hb_001711_050--Hb_138462_010 Hb_001711_050--Hb_010534_050 Hb_000206_190 Hb_000206_190 Hb_071869_010--Hb_000206_190 Hb_071869_010--Hb_002154_070 Hb_024272_010 Hb_024272_010 Hb_071869_010--Hb_024272_010 Hb_010317_030 Hb_010317_030 Hb_071869_010--Hb_010317_030 Hb_000100_130 Hb_000100_130 Hb_071869_010--Hb_000100_130 Hb_001718_050 Hb_001718_050 Hb_002154_070--Hb_001718_050 Hb_004244_010 Hb_004244_010 Hb_002154_070--Hb_004244_010 Hb_002154_070--Hb_000206_190 Hb_001050_030 Hb_001050_030 Hb_002154_070--Hb_001050_030 Hb_028912_040 Hb_028912_040 Hb_002154_070--Hb_028912_040 Hb_001050_060 Hb_001050_060 Hb_010534_050--Hb_001050_060 Hb_010534_050--Hb_071869_010 Hb_010534_050--Hb_141296_010 Hb_010534_050--Hb_000206_190 Hb_006960_010--Hb_141296_010 Hb_009119_020 Hb_009119_020 Hb_006960_010--Hb_009119_020 Hb_006960_010--Hb_004244_010 Hb_012490_100 Hb_012490_100 Hb_006960_010--Hb_012490_100 Hb_006960_010--Hb_138462_010 Hb_060458_010 Hb_060458_010 Hb_141296_010--Hb_060458_010 Hb_000098_300 Hb_000098_300 Hb_141296_010--Hb_000098_300 Hb_141296_010--Hb_138462_010 Hb_060391_010 Hb_060391_010 Hb_141296_010--Hb_060391_010 Hb_007333_040 Hb_007333_040 Hb_141296_010--Hb_007333_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1905 3.9427 19.5611 26.8932 2.42007 86.664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.543986 1.19695 30.4201 26.9766 25.7617

CAGE analysis