Hb_000928_070

Information

Type -
Description -
Location Contig928: 31539-34901
Sequence    

Annotation

kegg
ID tcc:TCM_025637
description Root cap 1 isoform 1
nr
ID XP_012070276.1
description PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9LF50
description Maltose excess protein 1, chloroplastic OS=Arabidopsis thaliana GN=MEX1 PE=2 SV=2
trembl
ID A0A067KX40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02583 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62749: 31633-34227 , PASA_asmbl_62750: 34248-34516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_070 0.0 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
2 Hb_001541_120 0.0477656892 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
3 Hb_000288_030 0.0517894617 - - PREDICTED: syntaxin-32 [Jatropha curcas]
4 Hb_000856_010 0.0579886671 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
5 Hb_012022_040 0.0600723397 - - Protein SIS1, putative [Ricinus communis]
6 Hb_003582_060 0.0635659534 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
7 Hb_000140_090 0.064320123 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
8 Hb_004109_220 0.0645092336 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
9 Hb_004078_040 0.0666623651 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
10 Hb_000221_190 0.067584127 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
11 Hb_003124_150 0.0699437928 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
12 Hb_003878_090 0.0703995208 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
13 Hb_000003_230 0.0706311505 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
14 Hb_000393_020 0.0707283099 - - lipid binding protein, putative [Ricinus communis]
15 Hb_005054_110 0.0707614467 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
16 Hb_000925_130 0.0716026006 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
17 Hb_001514_120 0.0734070995 - - hypothetical protein VITISV_015004 [Vitis vinifera]
18 Hb_001300_150 0.0739758935 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
19 Hb_149985_010 0.0747067349 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
20 Hb_000733_180 0.0748933684 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]

Gene co-expression network

sample Hb_000928_070 Hb_000928_070 Hb_001541_120 Hb_001541_120 Hb_000928_070--Hb_001541_120 Hb_000288_030 Hb_000288_030 Hb_000928_070--Hb_000288_030 Hb_000856_010 Hb_000856_010 Hb_000928_070--Hb_000856_010 Hb_012022_040 Hb_012022_040 Hb_000928_070--Hb_012022_040 Hb_003582_060 Hb_003582_060 Hb_000928_070--Hb_003582_060 Hb_000140_090 Hb_000140_090 Hb_000928_070--Hb_000140_090 Hb_001766_050 Hb_001766_050 Hb_001541_120--Hb_001766_050 Hb_006740_030 Hb_006740_030 Hb_001541_120--Hb_006740_030 Hb_001541_120--Hb_000140_090 Hb_008421_020 Hb_008421_020 Hb_001541_120--Hb_008421_020 Hb_003124_150 Hb_003124_150 Hb_001541_120--Hb_003124_150 Hb_004109_220 Hb_004109_220 Hb_000288_030--Hb_004109_220 Hb_000003_230 Hb_000003_230 Hb_000288_030--Hb_000003_230 Hb_000925_130 Hb_000925_130 Hb_000288_030--Hb_000925_130 Hb_000288_030--Hb_003582_060 Hb_000288_030--Hb_012022_040 Hb_000856_010--Hb_012022_040 Hb_005054_110 Hb_005054_110 Hb_000856_010--Hb_005054_110 Hb_004078_040 Hb_004078_040 Hb_000856_010--Hb_004078_040 Hb_000221_190 Hb_000221_190 Hb_000856_010--Hb_000221_190 Hb_000359_060 Hb_000359_060 Hb_000856_010--Hb_000359_060 Hb_001278_100 Hb_001278_100 Hb_012022_040--Hb_001278_100 Hb_012022_040--Hb_004109_220 Hb_149985_010 Hb_149985_010 Hb_012022_040--Hb_149985_010 Hb_012022_040--Hb_000221_190 Hb_006615_240 Hb_006615_240 Hb_003582_060--Hb_006615_240 Hb_003582_060--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_003582_060--Hb_003304_020 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_000140_090--Hb_006740_030 Hb_007533_040 Hb_007533_040 Hb_000140_090--Hb_007533_040 Hb_005016_040 Hb_005016_040 Hb_000140_090--Hb_005016_040 Hb_010578_080 Hb_010578_080 Hb_000140_090--Hb_010578_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.83139 9.25191 11.7736 13.7029 6.93443 7.91455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3086 16.8815 16.1412 9.53984 13.8199

CAGE analysis