Hb_000928_110

Information

Type -
Description -
Location Contig928: 68133-81628
Sequence    

Annotation

kegg
ID pop:POPTR_0013s07280g
description POPTRDRAFT_242255; hypothetical protein
nr
ID XP_012070280.1
description PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
swissprot
ID Q9P6P3
description Serine/threonine-protein kinase ppk15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppk15 PE=1 SV=1
trembl
ID A0A067KTL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02586 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase minibrain-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62755: 68402-69427 , PASA_asmbl_62756: 68959-81596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_110 0.0 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
2 Hb_004800_100 0.0949390132 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005356_040 0.0950740928 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
4 Hb_017131_010 0.0956779901 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
5 Hb_005488_200 0.097372775 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
6 Hb_000700_040 0.1000416066 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]
7 Hb_003376_250 0.100231385 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
8 Hb_148113_010 0.1014878271 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
9 Hb_001504_330 0.1015060438 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
10 Hb_000110_140 0.1016782439 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
11 Hb_011344_190 0.1022723862 - - PREDICTED: maspardin [Jatropha curcas]
12 Hb_000454_090 0.1033233556 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
13 Hb_000252_100 0.1039115627 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
14 Hb_000521_130 0.1065923295 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
15 Hb_000173_410 0.1085144528 - - PREDICTED: BI1-like protein [Jatropha curcas]
16 Hb_002043_040 0.1111747134 - - PREDICTED: uncharacterized protein LOC105631509 [Jatropha curcas]
17 Hb_007044_050 0.1129469388 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
18 Hb_008232_010 0.1131878551 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
19 Hb_000603_080 0.1136194697 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
20 Hb_000140_380 0.1142634621 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]

Gene co-expression network

sample Hb_000928_110 Hb_000928_110 Hb_004800_100 Hb_004800_100 Hb_000928_110--Hb_004800_100 Hb_005356_040 Hb_005356_040 Hb_000928_110--Hb_005356_040 Hb_017131_010 Hb_017131_010 Hb_000928_110--Hb_017131_010 Hb_005488_200 Hb_005488_200 Hb_000928_110--Hb_005488_200 Hb_000700_040 Hb_000700_040 Hb_000928_110--Hb_000700_040 Hb_003376_250 Hb_003376_250 Hb_000928_110--Hb_003376_250 Hb_000252_100 Hb_000252_100 Hb_004800_100--Hb_000252_100 Hb_004627_030 Hb_004627_030 Hb_004800_100--Hb_004627_030 Hb_000300_430 Hb_000300_430 Hb_004800_100--Hb_000300_430 Hb_000173_410 Hb_000173_410 Hb_004800_100--Hb_000173_410 Hb_001123_160 Hb_001123_160 Hb_004800_100--Hb_001123_160 Hb_002045_070 Hb_002045_070 Hb_004800_100--Hb_002045_070 Hb_000465_270 Hb_000465_270 Hb_005356_040--Hb_000465_270 Hb_000007_140 Hb_000007_140 Hb_005356_040--Hb_000007_140 Hb_000110_140 Hb_000110_140 Hb_005356_040--Hb_000110_140 Hb_005356_040--Hb_004800_100 Hb_001504_330 Hb_001504_330 Hb_005356_040--Hb_001504_330 Hb_008232_010 Hb_008232_010 Hb_017131_010--Hb_008232_010 Hb_011344_190 Hb_011344_190 Hb_017131_010--Hb_011344_190 Hb_002631_010 Hb_002631_010 Hb_017131_010--Hb_002631_010 Hb_017131_010--Hb_004800_100 Hb_000521_130 Hb_000521_130 Hb_017131_010--Hb_000521_130 Hb_000982_080 Hb_000982_080 Hb_005488_200--Hb_000982_080 Hb_007416_060 Hb_007416_060 Hb_005488_200--Hb_007416_060 Hb_005488_200--Hb_003376_250 Hb_148113_010 Hb_148113_010 Hb_005488_200--Hb_148113_010 Hb_000603_080 Hb_000603_080 Hb_005488_200--Hb_000603_080 Hb_003697_040 Hb_003697_040 Hb_005488_200--Hb_003697_040 Hb_000700_040--Hb_011344_190 Hb_010560_050 Hb_010560_050 Hb_000700_040--Hb_010560_050 Hb_000649_140 Hb_000649_140 Hb_000700_040--Hb_000649_140 Hb_000700_040--Hb_002631_010 Hb_000700_040--Hb_003376_250 Hb_003126_070 Hb_003126_070 Hb_000700_040--Hb_003126_070 Hb_003376_250--Hb_000982_080 Hb_003376_250--Hb_011344_190 Hb_001195_200 Hb_001195_200 Hb_003376_250--Hb_001195_200 Hb_000327_180 Hb_000327_180 Hb_003376_250--Hb_000327_180 Hb_003376_250--Hb_007416_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42556 11.9113 6.81335 26.35 5.32865 7.95412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7817 22.503 31.8209 16.7234 16.6102

CAGE analysis