Hb_000928_200

Information

Type -
Description -
Location Contig928: 185685-186665
Sequence    

Annotation

kegg
ID pop:POPTR_0013s07100g
description POPTRDRAFT_242198; hypothetical protein
nr
ID XP_012070295.1
description PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
swissprot
ID Q9SRQ8
description RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2
trembl
ID B9I6S0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s07100g PE=4 SV=2
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl52-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_200 0.0 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
2 Hb_000457_120 0.0849183247 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
3 Hb_000317_170 0.0923796775 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
4 Hb_005305_040 0.1006341483 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
5 Hb_000856_030 0.1028929259 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000030_230 0.104420698 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
7 Hb_000307_060 0.1066842498 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
8 Hb_000367_080 0.1077496308 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
9 Hb_002759_030 0.1116187838 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
10 Hb_000000_260 0.1118188692 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
11 Hb_029791_010 0.1136215928 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
12 Hb_001936_120 0.114600474 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
13 Hb_000137_050 0.1161373881 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000864_050 0.1218570037 - - zinc finger protein, putative [Ricinus communis]
15 Hb_000030_130 0.1247443085 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
16 Hb_001688_030 0.1251630365 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
17 Hb_000599_160 0.1271871619 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
18 Hb_003086_030 0.1287028419 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
19 Hb_180980_010 0.1317206673 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
20 Hb_133492_010 0.1332282249 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000928_200 Hb_000928_200 Hb_000457_120 Hb_000457_120 Hb_000928_200--Hb_000457_120 Hb_000317_170 Hb_000317_170 Hb_000928_200--Hb_000317_170 Hb_005305_040 Hb_005305_040 Hb_000928_200--Hb_005305_040 Hb_000856_030 Hb_000856_030 Hb_000928_200--Hb_000856_030 Hb_000030_230 Hb_000030_230 Hb_000928_200--Hb_000030_230 Hb_000307_060 Hb_000307_060 Hb_000928_200--Hb_000307_060 Hb_001936_120 Hb_001936_120 Hb_000457_120--Hb_001936_120 Hb_029791_010 Hb_029791_010 Hb_000457_120--Hb_029791_010 Hb_000020_200 Hb_000020_200 Hb_000457_120--Hb_000020_200 Hb_000457_120--Hb_005305_040 Hb_002759_030 Hb_002759_030 Hb_000457_120--Hb_002759_030 Hb_000000_260 Hb_000000_260 Hb_000317_170--Hb_000000_260 Hb_001680_050 Hb_001680_050 Hb_000317_170--Hb_001680_050 Hb_000317_170--Hb_000856_030 Hb_000317_170--Hb_000307_060 Hb_000317_170--Hb_029791_010 Hb_000599_160 Hb_000599_160 Hb_000317_170--Hb_000599_160 Hb_000161_140 Hb_000161_140 Hb_005305_040--Hb_000161_140 Hb_005305_040--Hb_001936_120 Hb_005305_040--Hb_002759_030 Hb_163950_050 Hb_163950_050 Hb_005305_040--Hb_163950_050 Hb_000368_040 Hb_000368_040 Hb_000856_030--Hb_000368_040 Hb_000856_030--Hb_001680_050 Hb_000137_050 Hb_000137_050 Hb_000856_030--Hb_000137_050 Hb_007579_030 Hb_007579_030 Hb_000856_030--Hb_007579_030 Hb_000197_260 Hb_000197_260 Hb_000856_030--Hb_000197_260 Hb_000030_230--Hb_000307_060 Hb_003582_030 Hb_003582_030 Hb_000030_230--Hb_003582_030 Hb_000030_230--Hb_000317_170 Hb_000087_190 Hb_000087_190 Hb_000030_230--Hb_000087_190 Hb_000030_230--Hb_000000_260 Hb_002186_110 Hb_002186_110 Hb_000030_230--Hb_002186_110 Hb_000307_060--Hb_000599_160 Hb_005183_070 Hb_005183_070 Hb_000307_060--Hb_005183_070 Hb_000307_060--Hb_000000_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.203969 5.13444 3.37265 25.0499 0.045458 0.170152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155713 0.449041 0.450252 1.11684 9.50703

CAGE analysis