Hb_000928_210

Information

Type -
Description -
Location Contig928: 188349-199054
Sequence    

Annotation

kegg
ID rcu:RCOM_1516730
description hypothetical protein
nr
ID XP_012070296.1
description PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L505
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02605 PE=4 SV=1
Gene Ontology
ID GO:0005886
description PREDICTED: uncharacterized protein LOC105632512 isoform X1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62770: 195427-196069 , PASA_asmbl_62771: 188295-200263 , PASA_asmbl_62772: 188377-200324 , PASA_asmbl_62773: 190942-191207 , PASA_asmbl_62774: 192631-192809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_210 0.0 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
2 Hb_000876_070 0.0587209867 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
3 Hb_004254_120 0.0590531842 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002739_100 0.0627269796 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
5 Hb_004724_080 0.0652655477 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000206_210 0.0686770584 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
7 Hb_002046_180 0.0752205045 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
8 Hb_032202_190 0.0752768799 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
9 Hb_004635_100 0.0755298027 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
10 Hb_005779_060 0.0760507753 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
11 Hb_029879_130 0.0771151559 - - Derlin-2, putative [Ricinus communis]
12 Hb_009838_080 0.077794613 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
13 Hb_003142_020 0.0785316396 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
14 Hb_011316_040 0.079113163 - - peptidase, putative [Ricinus communis]
15 Hb_009767_110 0.0793925166 - - -
16 Hb_000047_030 0.0802181879 - - tfiif-alpha, putative [Ricinus communis]
17 Hb_003053_020 0.0807725473 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
18 Hb_000754_040 0.0809774309 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
19 Hb_000173_290 0.0814589163 - - guanylate kinase, putative [Ricinus communis]
20 Hb_075449_010 0.0821430035 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000928_210 Hb_000928_210 Hb_000876_070 Hb_000876_070 Hb_000928_210--Hb_000876_070 Hb_004254_120 Hb_004254_120 Hb_000928_210--Hb_004254_120 Hb_002739_100 Hb_002739_100 Hb_000928_210--Hb_002739_100 Hb_004724_080 Hb_004724_080 Hb_000928_210--Hb_004724_080 Hb_000206_210 Hb_000206_210 Hb_000928_210--Hb_000206_210 Hb_002046_180 Hb_002046_180 Hb_000928_210--Hb_002046_180 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_000876_070--Hb_002046_180 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_004254_120--Hb_032202_190 Hb_004254_120--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_004254_120--Hb_005305_080 Hb_004254_120--Hb_000206_210 Hb_004254_120--Hb_000876_070 Hb_002739_100--Hb_005779_060 Hb_002739_100--Hb_007691_030 Hb_001242_060 Hb_001242_060 Hb_002739_100--Hb_001242_060 Hb_031527_040 Hb_031527_040 Hb_002739_100--Hb_031527_040 Hb_004724_080--Hb_002739_100 Hb_017358_030 Hb_017358_030 Hb_004724_080--Hb_017358_030 Hb_004724_080--Hb_000876_070 Hb_002105_040 Hb_002105_040 Hb_004724_080--Hb_002105_040 Hb_000003_250 Hb_000003_250 Hb_004724_080--Hb_000003_250 Hb_024185_020 Hb_024185_020 Hb_000206_210--Hb_024185_020 Hb_000777_040 Hb_000777_040 Hb_000206_210--Hb_000777_040 Hb_009838_080 Hb_009838_080 Hb_000206_210--Hb_009838_080 Hb_000173_290 Hb_000173_290 Hb_000206_210--Hb_000173_290 Hb_012019_010 Hb_012019_010 Hb_002046_180--Hb_012019_010 Hb_002110_150 Hb_002110_150 Hb_002046_180--Hb_002110_150 Hb_002046_180--Hb_005779_060 Hb_008725_260 Hb_008725_260 Hb_002046_180--Hb_008725_260 Hb_005463_100 Hb_005463_100 Hb_002046_180--Hb_005463_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.58 8.8968 6.98654 8.90486 13.4935 14.8065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5704 21.2366 22.8491 7.66614 13.2668

CAGE analysis