Hb_000928_240

Information

Type -
Description -
Location Contig928: 225794-228007
Sequence    

Annotation

kegg
ID rcu:RCOM_1516690
description hypothetical protein
nr
ID XP_012070300.1
description PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SDD3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1516690 PE=4 SV=1
Gene Ontology
ID GO:0016272
description prefoldin chaperone subunit family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62780: 225848-227809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_240 0.0 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
2 Hb_125000_010 0.0666485676 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
3 Hb_001824_070 0.0668236989 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
4 Hb_003878_190 0.0689270253 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
5 Hb_000703_140 0.0701016088 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
6 Hb_002097_110 0.0713459499 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_000318_380 0.0722948798 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
8 Hb_009711_030 0.0732415739 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
9 Hb_000465_060 0.0743110927 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
10 Hb_002107_130 0.0756266107 - - protein with unknown function [Ricinus communis]
11 Hb_001477_110 0.0757031923 - - prohibitin, putative [Ricinus communis]
12 Hb_003125_040 0.0759600386 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
13 Hb_022250_040 0.0759619249 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
14 Hb_000665_240 0.0773528194 - - Vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_004595_020 0.0783364109 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
16 Hb_000152_430 0.0796865305 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
17 Hb_000417_110 0.0797079879 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
18 Hb_001584_070 0.079830775 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003540_040 0.080114113 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
20 Hb_000371_080 0.0806890678 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]

Gene co-expression network

sample Hb_000928_240 Hb_000928_240 Hb_125000_010 Hb_125000_010 Hb_000928_240--Hb_125000_010 Hb_001824_070 Hb_001824_070 Hb_000928_240--Hb_001824_070 Hb_003878_190 Hb_003878_190 Hb_000928_240--Hb_003878_190 Hb_000703_140 Hb_000703_140 Hb_000928_240--Hb_000703_140 Hb_002097_110 Hb_002097_110 Hb_000928_240--Hb_002097_110 Hb_000318_380 Hb_000318_380 Hb_000928_240--Hb_000318_380 Hb_010436_070 Hb_010436_070 Hb_125000_010--Hb_010436_070 Hb_009711_030 Hb_009711_030 Hb_125000_010--Hb_009711_030 Hb_003540_040 Hb_003540_040 Hb_125000_010--Hb_003540_040 Hb_118419_020 Hb_118419_020 Hb_125000_010--Hb_118419_020 Hb_002411_170 Hb_002411_170 Hb_125000_010--Hb_002411_170 Hb_022250_040 Hb_022250_040 Hb_125000_010--Hb_022250_040 Hb_001477_110 Hb_001477_110 Hb_001824_070--Hb_001477_110 Hb_001824_070--Hb_009711_030 Hb_001584_070 Hb_001584_070 Hb_001824_070--Hb_001584_070 Hb_001824_070--Hb_003878_190 Hb_000371_080 Hb_000371_080 Hb_001824_070--Hb_000371_080 Hb_000465_060 Hb_000465_060 Hb_001824_070--Hb_000465_060 Hb_003001_060 Hb_003001_060 Hb_003878_190--Hb_003001_060 Hb_000392_270 Hb_000392_270 Hb_003878_190--Hb_000392_270 Hb_003878_190--Hb_009711_030 Hb_000977_080 Hb_000977_080 Hb_003878_190--Hb_000977_080 Hb_000260_080 Hb_000260_080 Hb_000703_140--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000703_140--Hb_011794_070 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_000703_140--Hb_009711_030 Hb_000376_050 Hb_000376_050 Hb_000703_140--Hb_000376_050 Hb_000883_050 Hb_000883_050 Hb_000703_140--Hb_000883_050 Hb_004662_030 Hb_004662_030 Hb_002097_110--Hb_004662_030 Hb_015001_020 Hb_015001_020 Hb_002097_110--Hb_015001_020 Hb_007426_230 Hb_007426_230 Hb_002097_110--Hb_007426_230 Hb_002097_110--Hb_009711_030 Hb_002097_110--Hb_027472_180 Hb_002097_110--Hb_001824_070 Hb_000152_430 Hb_000152_430 Hb_000318_380--Hb_000152_430 Hb_000318_380--Hb_001824_070 Hb_007747_090 Hb_007747_090 Hb_000318_380--Hb_007747_090 Hb_000318_380--Hb_001477_110 Hb_011139_020 Hb_011139_020 Hb_000318_380--Hb_011139_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4415 3.6787 5.4098 4.5251 19.04 19.584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1635 26.4585 13.9261 7.49696 3.25156

CAGE analysis