Hb_000928_260

Information

Type -
Description -
Location Contig928: 235626-236759
Sequence    

Annotation

kegg
ID pop:POPTR_0019s06080g
description POPTRDRAFT_780375; hypothetical protein
nr
ID XP_002325889.1
description hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
swissprot
ID Q8GX29
description F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1
trembl
ID B9IPY9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s06080g PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein skip25-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62783: 235974-236098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_260 0.0 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
2 Hb_002301_070 0.0265477374 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_003787_030 0.0343136341 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006573_240 0.0520764195 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
5 Hb_010697_020 0.058099263 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000883_080 0.0591096762 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_004143_080 0.0604699934 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
8 Hb_002329_050 0.0627230043 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000815_120 0.0655885375 - - calcium ion binding protein, putative [Ricinus communis]
10 Hb_000307_100 0.0679698173 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
11 Hb_003033_020 0.0724441002 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
12 Hb_000268_050 0.0779604747 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
13 Hb_000704_020 0.0804059961 - - conserved hypothetical protein [Ricinus communis]
14 Hb_127349_020 0.0829210754 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
15 Hb_000140_040 0.0829509117 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
16 Hb_180094_010 0.0833024733 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
17 Hb_046825_010 0.0836597804 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
18 Hb_006718_030 0.0840731539 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
19 Hb_029622_060 0.0856413734 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
20 Hb_154064_010 0.0866798103 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]

Gene co-expression network

sample Hb_000928_260 Hb_000928_260 Hb_002301_070 Hb_002301_070 Hb_000928_260--Hb_002301_070 Hb_003787_030 Hb_003787_030 Hb_000928_260--Hb_003787_030 Hb_006573_240 Hb_006573_240 Hb_000928_260--Hb_006573_240 Hb_010697_020 Hb_010697_020 Hb_000928_260--Hb_010697_020 Hb_000883_080 Hb_000883_080 Hb_000928_260--Hb_000883_080 Hb_004143_080 Hb_004143_080 Hb_000928_260--Hb_004143_080 Hb_002301_070--Hb_003787_030 Hb_002301_070--Hb_010697_020 Hb_002301_070--Hb_004143_080 Hb_000815_120 Hb_000815_120 Hb_002301_070--Hb_000815_120 Hb_002301_070--Hb_006573_240 Hb_003787_030--Hb_006573_240 Hb_003787_030--Hb_010697_020 Hb_003787_030--Hb_000815_120 Hb_003787_030--Hb_004143_080 Hb_003033_020 Hb_003033_020 Hb_006573_240--Hb_003033_020 Hb_002329_050 Hb_002329_050 Hb_006573_240--Hb_002329_050 Hb_000307_100 Hb_000307_100 Hb_006573_240--Hb_000307_100 Hb_001348_160 Hb_001348_160 Hb_010697_020--Hb_001348_160 Hb_001191_060 Hb_001191_060 Hb_010697_020--Hb_001191_060 Hb_001269_480 Hb_001269_480 Hb_010697_020--Hb_001269_480 Hb_000883_080--Hb_002329_050 Hb_011362_010 Hb_011362_010 Hb_000883_080--Hb_011362_010 Hb_005483_040 Hb_005483_040 Hb_000883_080--Hb_005483_040 Hb_018487_040 Hb_018487_040 Hb_000883_080--Hb_018487_040 Hb_006718_030 Hb_006718_030 Hb_000883_080--Hb_006718_030 Hb_004143_080--Hb_000815_120 Hb_004818_010 Hb_004818_010 Hb_004143_080--Hb_004818_010 Hb_003093_050 Hb_003093_050 Hb_004143_080--Hb_003093_050 Hb_000704_020 Hb_000704_020 Hb_004143_080--Hb_000704_020 Hb_001951_050 Hb_001951_050 Hb_004143_080--Hb_001951_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.515576 6.63786 7.90043 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0434284 0 0 0.0410973 29.3835

CAGE analysis