Hb_000930_020

Information

Type -
Description -
Location Contig930: 22751-25834
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa026493mg
description hypothetical protein
nr
ID XP_007199424.1
description hypothetical protein PRUPE_ppa026493mg [Prunus persica]
swissprot
ID A4IT60
description Kynurenine formamidase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=kynB PE=3 SV=1
trembl
ID M5VUN8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026493mg PE=4 SV=1
Gene Ontology
ID GO:0004061
description cyclase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000930_020 0.0 - - hypothetical protein PRUPE_ppa026493mg [Prunus persica]
2 Hb_000096_050 0.1055644855 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000805_220 0.1130584237 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_100526_020 0.123456937 - - hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
5 Hb_002060_070 0.1280797899 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
6 Hb_009492_020 0.145820817 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
7 Hb_000974_030 0.1538062241 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
8 Hb_001379_080 0.1551198982 - - PREDICTED: WAT1-related protein At5g07050-like [Vitis vinifera]
9 Hb_082972_010 0.1711373923 - - -
10 Hb_006501_140 0.1717866513 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
11 Hb_156850_050 0.1732250229 - - PREDICTED: uncharacterized protein LOC105635250 [Jatropha curcas]
12 Hb_002837_080 0.1765734372 - - acyltransferase, putative [Ricinus communis]
13 Hb_030949_010 0.1796730039 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
14 Hb_003589_100 0.1823288716 - - hypothetical protein JCGZ_03338 [Jatropha curcas]
15 Hb_000984_110 0.1890680317 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
16 Hb_001817_110 0.1931781095 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
17 Hb_001907_050 0.202476575 - - Receptor like protein 6, putative [Theobroma cacao]
18 Hb_004102_200 0.2026122542 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
19 Hb_152277_010 0.2035797128 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
20 Hb_003145_030 0.2041796889 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000930_020 Hb_000930_020 Hb_000096_050 Hb_000096_050 Hb_000930_020--Hb_000096_050 Hb_000805_220 Hb_000805_220 Hb_000930_020--Hb_000805_220 Hb_100526_020 Hb_100526_020 Hb_000930_020--Hb_100526_020 Hb_002060_070 Hb_002060_070 Hb_000930_020--Hb_002060_070 Hb_009492_020 Hb_009492_020 Hb_000930_020--Hb_009492_020 Hb_000974_030 Hb_000974_030 Hb_000930_020--Hb_000974_030 Hb_000096_050--Hb_100526_020 Hb_000096_050--Hb_000974_030 Hb_156850_050 Hb_156850_050 Hb_000096_050--Hb_156850_050 Hb_000096_050--Hb_002060_070 Hb_000752_040 Hb_000752_040 Hb_000096_050--Hb_000752_040 Hb_006501_140 Hb_006501_140 Hb_000805_220--Hb_006501_140 Hb_000805_220--Hb_009492_020 Hb_000805_220--Hb_002060_070 Hb_000805_220--Hb_100526_020 Hb_000805_220--Hb_000096_050 Hb_100526_020--Hb_000974_030 Hb_001379_080 Hb_001379_080 Hb_100526_020--Hb_001379_080 Hb_000984_110 Hb_000984_110 Hb_100526_020--Hb_000984_110 Hb_082972_010 Hb_082972_010 Hb_002060_070--Hb_082972_010 Hb_001817_110 Hb_001817_110 Hb_002060_070--Hb_001817_110 Hb_002837_080 Hb_002837_080 Hb_002060_070--Hb_002837_080 Hb_002060_070--Hb_001379_080 Hb_003589_100 Hb_003589_100 Hb_009492_020--Hb_003589_100 Hb_009492_020--Hb_002837_080 Hb_009492_020--Hb_002060_070 Hb_009492_020--Hb_156850_050 Hb_003145_030 Hb_003145_030 Hb_000974_030--Hb_003145_030 Hb_005048_090 Hb_005048_090 Hb_000974_030--Hb_005048_090 Hb_000181_390 Hb_000181_390 Hb_000974_030--Hb_000181_390 Hb_009403_010 Hb_009403_010 Hb_000974_030--Hb_009403_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.78594 0.0609625 3.12764 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0609188 0.047905 0 0 2.61558

CAGE analysis