Hb_000930_030

Information

Type -
Description -
Location Contig930: 40471-45540
Sequence    

Annotation

kegg
ID rcu:RCOM_0811620
description hypothetical protein
nr
ID XP_012066693.1
description PREDICTED: uncharacterized protein LOC105629651 [Jatropha curcas]
swissprot
ID Q81PP9
description Kynurenine formamidase OS=Bacillus anthracis GN=kynB PE=1 SV=1
trembl
ID A0A067LF85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22132 PE=4 SV=1
Gene Ontology
ID GO:0004061
description cyclase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62826: 40443-45610
cDNA
(Sanger)
(ID:Location)		 001_F22.ab1: 40531-44991 , 012_N23.ab1: 40543-44520 , 035_L16.ab1: 40443-44497 , 044_L09.ab1: 40531-44513

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000930_030 0.0 - - PREDICTED: uncharacterized protein LOC105629651 [Jatropha curcas]
2 Hb_002232_410 0.0672653761 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
3 Hb_000732_010 0.0741547716 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
4 Hb_005054_230 0.0812795383 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
5 Hb_000002_340 0.084425395 - - PREDICTED: peroxisomal bifunctional enzyme-like [Jatropha curcas]
6 Hb_010519_050 0.0853860054 - - galactokinase, putative [Ricinus communis]
7 Hb_005271_220 0.0867908515 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
8 Hb_000030_030 0.08816817 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
9 Hb_002107_030 0.0898748901 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
10 Hb_003376_330 0.0903937325 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
11 Hb_014497_050 0.0917682744 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
12 Hb_008725_230 0.0938182049 - - PREDICTED: CTP synthase [Jatropha curcas]
13 Hb_008511_120 0.0938336645 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
14 Hb_000958_110 0.0960896856 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
15 Hb_004586_300 0.0987591889 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
16 Hb_010368_010 0.098796618 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
17 Hb_021409_040 0.0988536811 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
18 Hb_000202_040 0.0992766516 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
19 Hb_168978_010 0.0996974829 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
20 Hb_003761_010 0.0999592739 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000930_030 Hb_000930_030 Hb_002232_410 Hb_002232_410 Hb_000930_030--Hb_002232_410 Hb_000732_010 Hb_000732_010 Hb_000930_030--Hb_000732_010 Hb_005054_230 Hb_005054_230 Hb_000930_030--Hb_005054_230 Hb_000002_340 Hb_000002_340 Hb_000930_030--Hb_000002_340 Hb_010519_050 Hb_010519_050 Hb_000930_030--Hb_010519_050 Hb_005271_220 Hb_005271_220 Hb_000930_030--Hb_005271_220 Hb_008725_230 Hb_008725_230 Hb_002232_410--Hb_008725_230 Hb_000030_030 Hb_000030_030 Hb_002232_410--Hb_000030_030 Hb_002205_110 Hb_002205_110 Hb_002232_410--Hb_002205_110 Hb_002232_410--Hb_000732_010 Hb_002232_410--Hb_005271_220 Hb_000028_370 Hb_000028_370 Hb_002232_410--Hb_000028_370 Hb_065525_040 Hb_065525_040 Hb_000732_010--Hb_065525_040 Hb_000331_550 Hb_000331_550 Hb_000732_010--Hb_000331_550 Hb_000732_010--Hb_002205_110 Hb_000708_030 Hb_000708_030 Hb_000732_010--Hb_000708_030 Hb_001205_240 Hb_001205_240 Hb_000732_010--Hb_001205_240 Hb_002107_030 Hb_002107_030 Hb_005054_230--Hb_002107_030 Hb_001369_730 Hb_001369_730 Hb_005054_230--Hb_001369_730 Hb_000009_090 Hb_000009_090 Hb_005054_230--Hb_000009_090 Hb_002890_290 Hb_002890_290 Hb_005054_230--Hb_002890_290 Hb_005116_160 Hb_005116_160 Hb_005054_230--Hb_005116_160 Hb_000002_340--Hb_000732_010 Hb_000958_110 Hb_000958_110 Hb_000002_340--Hb_000958_110 Hb_000002_340--Hb_002107_030 Hb_003057_100 Hb_003057_100 Hb_000002_340--Hb_003057_100 Hb_001396_200 Hb_001396_200 Hb_000002_340--Hb_001396_200 Hb_007336_010 Hb_007336_010 Hb_010519_050--Hb_007336_010 Hb_005396_150 Hb_005396_150 Hb_010519_050--Hb_005396_150 Hb_010519_050--Hb_002232_410 Hb_003376_330 Hb_003376_330 Hb_010519_050--Hb_003376_330 Hb_005634_010 Hb_005634_010 Hb_010519_050--Hb_005634_010 Hb_005730_120 Hb_005730_120 Hb_005271_220--Hb_005730_120 Hb_002303_070 Hb_002303_070 Hb_005271_220--Hb_002303_070 Hb_032808_010 Hb_032808_010 Hb_005271_220--Hb_032808_010 Hb_008511_120 Hb_008511_120 Hb_005271_220--Hb_008511_120 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.1547 58.9152 44.05 62.2159 47.8447 36.939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.9401 51.4931 54.8007 52.208 40.4707

CAGE analysis