Hb_000933_030

Information

Type transcription factor
Description TF Family: ERF
Location Contig933: 72763-73920
Sequence    

Annotation

kegg
ID rcu:RCOM_0837860
description hypothetical protein
nr
ID XP_002522489.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6J9S1
description Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1
trembl
ID B9S920
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0837860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_030 0.0 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
2 Hb_011549_040 0.0352802644 - - -
3 Hb_000742_070 0.045731371 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
4 Hb_023582_030 0.0496033381 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_166360_010 0.0534339571 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
6 Hb_004218_270 0.0600320751 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
7 Hb_000134_190 0.0624117072 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
8 Hb_068804_190 0.0668367271 - - kinase, putative [Ricinus communis]
9 Hb_017110_030 0.0701383272 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
10 Hb_005532_080 0.0743056485 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
11 Hb_162450_010 0.074606058 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
12 Hb_000815_050 0.0773630081 - - PREDICTED: expansin-A1 [Populus euphratica]
13 Hb_093084_030 0.0782205753 - - oleosin2 [Plukenetia volubilis]
14 Hb_004686_040 0.0790098435 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
15 Hb_000816_140 0.0791826567 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
16 Hb_004079_070 0.0795117025 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
17 Hb_010577_020 0.0862332753 - - -
18 Hb_083963_010 0.0884354297 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
19 Hb_056506_040 0.0930858827 - - -
20 Hb_010883_170 0.0935153711 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000933_030 Hb_000933_030 Hb_011549_040 Hb_011549_040 Hb_000933_030--Hb_011549_040 Hb_000742_070 Hb_000742_070 Hb_000933_030--Hb_000742_070 Hb_023582_030 Hb_023582_030 Hb_000933_030--Hb_023582_030 Hb_166360_010 Hb_166360_010 Hb_000933_030--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_000933_030--Hb_004218_270 Hb_000134_190 Hb_000134_190 Hb_000933_030--Hb_000134_190 Hb_068804_190 Hb_068804_190 Hb_011549_040--Hb_068804_190 Hb_011549_040--Hb_166360_010 Hb_005532_080 Hb_005532_080 Hb_011549_040--Hb_005532_080 Hb_056506_040 Hb_056506_040 Hb_011549_040--Hb_056506_040 Hb_010577_020 Hb_010577_020 Hb_011549_040--Hb_010577_020 Hb_000742_070--Hb_023582_030 Hb_017110_030 Hb_017110_030 Hb_000742_070--Hb_017110_030 Hb_000742_070--Hb_000134_190 Hb_083963_010 Hb_083963_010 Hb_000742_070--Hb_083963_010 Hb_186458_010 Hb_186458_010 Hb_000742_070--Hb_186458_010 Hb_023582_030--Hb_000134_190 Hb_023582_030--Hb_017110_030 Hb_004686_040 Hb_004686_040 Hb_023582_030--Hb_004686_040 Hb_023582_030--Hb_186458_010 Hb_166360_010--Hb_005532_080 Hb_166360_010--Hb_068804_190 Hb_162450_010 Hb_162450_010 Hb_166360_010--Hb_162450_010 Hb_166360_010--Hb_004218_270 Hb_093084_030 Hb_093084_030 Hb_004218_270--Hb_093084_030 Hb_004218_270--Hb_162450_010 Hb_004218_270--Hb_011549_040 Hb_004218_270--Hb_005532_080 Hb_000134_190--Hb_004686_040 Hb_000134_190--Hb_017110_030 Hb_000134_190--Hb_186458_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0715418 0.16215 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0687909

CAGE analysis