Hb_000933_050

Information

Type -
Description -
Location Contig933: 93613-95620
Sequence    

Annotation

kegg
ID rcu:RCOM_0837880
description protein binding protein, putative
nr
ID XP_002522491.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q54ND3
description Protein UXT homolog OS=Dictyostelium discoideum GN=DDB_G0285389 PE=3 SV=1
trembl
ID B9S922
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0837880 PE=4 SV=1
Gene Ontology
ID GO:0016272
description protein uxt homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62886: 93679-95448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_050 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000098_190 0.1034890427 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
3 Hb_004032_060 0.1107788835 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
4 Hb_000714_030 0.1114847924 - - Nucleosome assembly [Gossypium arboreum]
5 Hb_001951_260 0.1132565664 - - 60S ribosomal protein L32, putative [Ricinus communis]
6 Hb_000670_020 0.1138691443 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
7 Hb_000001_110 0.1143446392 - - conserved hypothetical protein [Ricinus communis]
8 Hb_042202_010 0.1186184758 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
9 Hb_011537_010 0.1197754037 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
10 Hb_002477_240 0.1216831808 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
11 Hb_000084_290 0.1264162824 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
12 Hb_002107_130 0.1268572887 - - protein with unknown function [Ricinus communis]
13 Hb_116420_030 0.1300434485 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
14 Hb_000270_840 0.1305957652 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
15 Hb_025236_040 0.1306372911 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003746_040 0.1306533885 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
17 Hb_052135_030 0.1319228955 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
18 Hb_000465_040 0.1329414563 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
19 Hb_004884_220 0.1332062203 - - hypothetical protein 29 [Hevea brasiliensis]
20 Hb_005529_010 0.1341692263 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000933_050 Hb_000933_050 Hb_000098_190 Hb_000098_190 Hb_000933_050--Hb_000098_190 Hb_004032_060 Hb_004032_060 Hb_000933_050--Hb_004032_060 Hb_000714_030 Hb_000714_030 Hb_000933_050--Hb_000714_030 Hb_001951_260 Hb_001951_260 Hb_000933_050--Hb_001951_260 Hb_000670_020 Hb_000670_020 Hb_000933_050--Hb_000670_020 Hb_000001_110 Hb_000001_110 Hb_000933_050--Hb_000001_110 Hb_002784_040 Hb_002784_040 Hb_000098_190--Hb_002784_040 Hb_002107_130 Hb_002107_130 Hb_000098_190--Hb_002107_130 Hb_000098_190--Hb_000714_030 Hb_008578_010 Hb_008578_010 Hb_000098_190--Hb_008578_010 Hb_006816_150 Hb_006816_150 Hb_000098_190--Hb_006816_150 Hb_000307_170 Hb_000307_170 Hb_004032_060--Hb_000307_170 Hb_004032_060--Hb_001951_260 Hb_000482_110 Hb_000482_110 Hb_004032_060--Hb_000482_110 Hb_004032_050 Hb_004032_050 Hb_004032_060--Hb_004032_050 Hb_000290_020 Hb_000290_020 Hb_004032_060--Hb_000290_020 Hb_025236_040 Hb_025236_040 Hb_004032_060--Hb_025236_040 Hb_000742_140 Hb_000742_140 Hb_000714_030--Hb_000742_140 Hb_000457_110 Hb_000457_110 Hb_000714_030--Hb_000457_110 Hb_009767_120 Hb_009767_120 Hb_000714_030--Hb_009767_120 Hb_000933_180 Hb_000933_180 Hb_000714_030--Hb_000933_180 Hb_000465_040 Hb_000465_040 Hb_000714_030--Hb_000465_040 Hb_001951_260--Hb_025236_040 Hb_001951_260--Hb_000290_020 Hb_000084_290 Hb_000084_290 Hb_001951_260--Hb_000084_290 Hb_007558_010 Hb_007558_010 Hb_001951_260--Hb_007558_010 Hb_001047_100 Hb_001047_100 Hb_001951_260--Hb_001047_100 Hb_003292_040 Hb_003292_040 Hb_000670_020--Hb_003292_040 Hb_001564_130 Hb_001564_130 Hb_000670_020--Hb_001564_130 Hb_003683_050 Hb_003683_050 Hb_000670_020--Hb_003683_050 Hb_001348_070 Hb_001348_070 Hb_000670_020--Hb_001348_070 Hb_011970_030 Hb_011970_030 Hb_000670_020--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_000670_020--Hb_010368_020 Hb_000270_840 Hb_000270_840 Hb_000001_110--Hb_000270_840 Hb_000538_020 Hb_000538_020 Hb_000001_110--Hb_000538_020 Hb_001405_050 Hb_001405_050 Hb_000001_110--Hb_001405_050 Hb_005529_010 Hb_005529_010 Hb_000001_110--Hb_005529_010 Hb_000666_110 Hb_000666_110 Hb_000001_110--Hb_000666_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.6004 5.2556 20.8568 12.6647 56.6861 31.71
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.9662 56.6141 12.0001 8.30915 3.49732

CAGE analysis