Hb_000933_060

Information

Type -
Description -
Location Contig933: 101964-103028
Sequence    

Annotation

kegg
ID rcu:RCOM_0837890
description hypothetical protein
nr
ID XP_002522492.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S923
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0837890 PE=4 SV=1
Gene Ontology
ID GO:0016021
description son of sevenless

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62889: 102996-103275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_050454_010 0.0998548408 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
3 Hb_044736_010 0.1000357968 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_003994_280 0.1027332547 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
5 Hb_001640_030 0.1054851109 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
6 Hb_001018_130 0.1055039005 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
7 Hb_000031_150 0.1106943467 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
8 Hb_000083_250 0.1110787051 - - ring finger protein, putative [Ricinus communis]
9 Hb_001018_110 0.1117976617 - - unnamed protein product [Coffea canephora]
10 Hb_000048_060 0.1123657224 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
11 Hb_000025_090 0.1144079612 - - tubulin beta chain, putative [Ricinus communis]
12 Hb_004306_080 0.117322131 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
13 Hb_001496_070 0.1179006329 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
14 Hb_002811_060 0.118501503 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
15 Hb_000365_390 0.118974342 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
16 Hb_003430_060 0.1200896056 - - PREDICTED: potassium transporter 23 isoform X2 [Elaeis guineensis]
17 Hb_000050_190 0.1201270344 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002493_020 0.1222584663 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
19 Hb_001691_120 0.1223851841 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
20 Hb_001454_130 0.1257262387 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000933_060 Hb_000933_060 Hb_050454_010 Hb_050454_010 Hb_000933_060--Hb_050454_010 Hb_044736_010 Hb_044736_010 Hb_000933_060--Hb_044736_010 Hb_003994_280 Hb_003994_280 Hb_000933_060--Hb_003994_280 Hb_001640_030 Hb_001640_030 Hb_000933_060--Hb_001640_030 Hb_001018_130 Hb_001018_130 Hb_000933_060--Hb_001018_130 Hb_000031_150 Hb_000031_150 Hb_000933_060--Hb_000031_150 Hb_050454_010--Hb_044736_010 Hb_000483_220 Hb_000483_220 Hb_050454_010--Hb_000483_220 Hb_001766_080 Hb_001766_080 Hb_050454_010--Hb_001766_080 Hb_001377_270 Hb_001377_270 Hb_050454_010--Hb_001377_270 Hb_001018_110 Hb_001018_110 Hb_050454_010--Hb_001018_110 Hb_005269_040 Hb_005269_040 Hb_050454_010--Hb_005269_040 Hb_002445_120 Hb_002445_120 Hb_044736_010--Hb_002445_120 Hb_044736_010--Hb_001018_110 Hb_022833_100 Hb_022833_100 Hb_044736_010--Hb_022833_100 Hb_044736_010--Hb_001018_130 Hb_012322_010 Hb_012322_010 Hb_044736_010--Hb_012322_010 Hb_003994_280--Hb_001640_030 Hb_002631_070 Hb_002631_070 Hb_003994_280--Hb_002631_070 Hb_000213_010 Hb_000213_010 Hb_003994_280--Hb_000213_010 Hb_000048_060 Hb_000048_060 Hb_003994_280--Hb_000048_060 Hb_003994_280--Hb_001018_110 Hb_090051_030 Hb_090051_030 Hb_003994_280--Hb_090051_030 Hb_001640_030--Hb_002631_070 Hb_152202_010 Hb_152202_010 Hb_001640_030--Hb_152202_010 Hb_000362_150 Hb_000362_150 Hb_001640_030--Hb_000362_150 Hb_004680_120 Hb_004680_120 Hb_001640_030--Hb_004680_120 Hb_000050_190 Hb_000050_190 Hb_001640_030--Hb_000050_190 Hb_005023_010 Hb_005023_010 Hb_001018_130--Hb_005023_010 Hb_032050_040 Hb_032050_040 Hb_001018_130--Hb_032050_040 Hb_000107_200 Hb_000107_200 Hb_001018_130--Hb_000107_200 Hb_000146_050 Hb_000146_050 Hb_001018_130--Hb_000146_050 Hb_001018_130--Hb_001018_110 Hb_001018_130--Hb_002445_120 Hb_002811_060 Hb_002811_060 Hb_000031_150--Hb_002811_060 Hb_001047_030 Hb_001047_030 Hb_000031_150--Hb_001047_030 Hb_004306_080 Hb_004306_080 Hb_000031_150--Hb_004306_080 Hb_003050_390 Hb_003050_390 Hb_000031_150--Hb_003050_390 Hb_001691_120 Hb_001691_120 Hb_000031_150--Hb_001691_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.78298 2.23421 1.08635 5.7218 3.11427 5.54604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78148 1.95431 4.42919 2.48758 2.87895

CAGE analysis