Hb_000933_090

Information

Type -
Description -
Location Contig933: 119001-125573
Sequence    

Annotation

kegg
ID rcu:RCOM_0837910
description zinc finger protein, putative
nr
ID XP_012067714.1
description PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
swissprot
ID Q9C533
description Probable protein S-acyltransferase 22 OS=Arabidopsis thaliana GN=PAT22 PE=2 SV=2
trembl
ID B9S925
description S-acyltransferase OS=Ricinus communis GN=RCOM_0837910 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62890: 118817-125202 , PASA_asmbl_62891: 118743-125246 , PASA_asmbl_62892: 124083-125650 , PASA_asmbl_62894: 121832-125520
cDNA
(Sanger)
(ID:Location)		 008_M07.ab1: 124351-125650 , 018_L06.ab1: 121832-125520 , 024_J10.ab1: 122538-125518

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_090 0.0 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
2 Hb_007044_080 0.0580450162 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
3 Hb_004117_130 0.0640362921 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
4 Hb_004837_190 0.0763172786 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
5 Hb_000051_070 0.0781774937 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
6 Hb_001369_420 0.0830383727 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
7 Hb_000358_150 0.0841286542 - - hypothetical protein VITISV_012309 [Vitis vinifera]
8 Hb_007059_010 0.0843735296 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
9 Hb_020719_030 0.0855394288 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
10 Hb_000618_030 0.0860092337 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
11 Hb_000538_100 0.0868525962 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002149_020 0.0881994373 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
13 Hb_000023_220 0.0899344495 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
14 Hb_003090_080 0.0907906211 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
15 Hb_001199_020 0.0915643786 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
16 Hb_003813_130 0.0916885166 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
17 Hb_001689_020 0.0954257384 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
18 Hb_003030_070 0.0957944235 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
19 Hb_002506_020 0.0959511204 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
20 Hb_002671_100 0.0960262218 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000933_090 Hb_000933_090 Hb_007044_080 Hb_007044_080 Hb_000933_090--Hb_007044_080 Hb_004117_130 Hb_004117_130 Hb_000933_090--Hb_004117_130 Hb_004837_190 Hb_004837_190 Hb_000933_090--Hb_004837_190 Hb_000051_070 Hb_000051_070 Hb_000933_090--Hb_000051_070 Hb_001369_420 Hb_001369_420 Hb_000933_090--Hb_001369_420 Hb_000358_150 Hb_000358_150 Hb_000933_090--Hb_000358_150 Hb_007044_080--Hb_004117_130 Hb_000429_200 Hb_000429_200 Hb_007044_080--Hb_000429_200 Hb_000023_220 Hb_000023_220 Hb_007044_080--Hb_000023_220 Hb_028390_010 Hb_028390_010 Hb_007044_080--Hb_028390_010 Hb_001199_020 Hb_001199_020 Hb_007044_080--Hb_001199_020 Hb_002716_130 Hb_002716_130 Hb_004117_130--Hb_002716_130 Hb_020719_030 Hb_020719_030 Hb_004117_130--Hb_020719_030 Hb_000260_170 Hb_000260_170 Hb_004117_130--Hb_000260_170 Hb_004117_130--Hb_000023_220 Hb_006620_020 Hb_006620_020 Hb_004837_190--Hb_006620_020 Hb_031527_100 Hb_031527_100 Hb_004837_190--Hb_031527_100 Hb_001341_120 Hb_001341_120 Hb_004837_190--Hb_001341_120 Hb_000913_050 Hb_000913_050 Hb_004837_190--Hb_000913_050 Hb_000538_100 Hb_000538_100 Hb_004837_190--Hb_000538_100 Hb_000618_030 Hb_000618_030 Hb_004837_190--Hb_000618_030 Hb_001006_140 Hb_001006_140 Hb_000051_070--Hb_001006_140 Hb_000152_380 Hb_000152_380 Hb_000051_070--Hb_000152_380 Hb_000815_210 Hb_000815_210 Hb_000051_070--Hb_000815_210 Hb_005276_210 Hb_005276_210 Hb_000051_070--Hb_005276_210 Hb_000051_070--Hb_001369_420 Hb_003952_070 Hb_003952_070 Hb_000051_070--Hb_003952_070 Hb_000025_140 Hb_000025_140 Hb_001369_420--Hb_000025_140 Hb_000676_110 Hb_000676_110 Hb_001369_420--Hb_000676_110 Hb_008695_180 Hb_008695_180 Hb_001369_420--Hb_008695_180 Hb_001369_420--Hb_000358_150 Hb_001493_030 Hb_001493_030 Hb_001369_420--Hb_001493_030 Hb_001252_080 Hb_001252_080 Hb_000358_150--Hb_001252_080 Hb_000358_150--Hb_000676_110 Hb_000358_150--Hb_001493_030 Hb_000358_150--Hb_000051_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.0675 15.4648 16.6596 30.6963 65.9725 51.8802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.0037 27.1557 32.7803 23.1182 22.2955

CAGE analysis